RNA id: XR_003404008.2


Basic Information

Item Value
RNA id XR_003404008.2
length 381
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id LOC113540224
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30836352 ~ 30838110 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTCCATGGCATCCTACCTAATTTGCCTAGAATTGAGAATATCTCAATctcagtgtggtcttctgctgttgtagcccgtcTTCTTCCAGcCTTAgtagtgtgaacacagggtaatgagcaaaccagaggtgacagtggtgtgGAAATCTCCCTCAGACGACATGAGCAAGAATCCTCGAACTCAATAAGGAGCCCATCTTCTTCCACAAAGAGTAccaagaacTGTTTTGCAGCAAATAAAGCAATCGGAACATTGTGAACTCTGAATGGGACGCAGCCGGAGGGCTTCTTACCGATGCCGATGACCTTTTCGATCTTAATGCAGGAGGCGTCGATCTCTTTGGCGAATTCGCGCACGGCCTGGTTGGGGTCCTCGTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87654 lncRNA downstream 65178 30770097 ~ 30771174 (-) True G73977
TU87487 lncRNA downstream 358118 30477403 ~ 30478234 (-) False G73834
TU87738 lncRNA upstream 192279 31030389 ~ 31031380 (-) True G74047
TU87756 lncRNA upstream 218375 31056485 ~ 31116436 (-) True G74060
TU87963 lncRNA upstream 387124 31225234 ~ 31226588 (-) True G74255
TU87966 lncRNA upstream 398303 31236413 ~ 31275474 (-) True G74256
TU87968 lncRNA upstream 398303 31236413 ~ 31310909 (-) False G74256
XM_026937106.2 mRNA downstream 60650 30773449 ~ 30775702 (-) False ccl20l
XM_034303856.1 mRNA downstream 85384 30741527 ~ 30750968 (-) True LOC113540055
XM_026937067.2 mRNA downstream 111695 30721032 ~ 30724657 (-) False LOC113540512
XM_026937066.2 mRNA downstream 111695 30721032 ~ 30724657 (-) True LOC113540512
XM_034303822.1 mRNA downstream 135307 30593706 ~ 30701045 (-) True epha4b
XM_026936925.2 mRNA upstream 408950 31247060 ~ 31277249 (-) True rem2
XM_034304133.1 mRNA upstream 452711 31290821 ~ 31344984 (-) False carmil3
XM_026937089.2 mRNA upstream 452711 31290821 ~ 31344984 (-) False carmil3
XM_026937088.2 mRNA upstream 452711 31290821 ~ 31344984 (-) True carmil3
XM_026937091.2 mRNA upstream 452711 31290821 ~ 31323220 (-) False carmil3
TU87656 other downstream 60533 30773463 ~ 30775819 (-) True ccl20l
TU87613 other downstream 92526 30741669 ~ 30743826 (-) False LOC113540055
TU87233 other downstream 813827 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 1105495 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 1260625 29564602 ~ 29575727 (-) False LOC113540665
LOC113540068 other upstream 1028972 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 1032408 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 1033049 31871159 ~ 31871639 (-) False LOC117597010
TU88350 other upstream 1036199 31874309 ~ 31874827 (-) True G74547
TU88353 other upstream 1041924 31880034 ~ 31880556 (-) True G74550

Expression Profile