Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003404010.2 |
| length | 1089 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 3 |
| gene id | LOC113540239 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 26497033 ~ 26499267 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko03460 | Fanconi anemia pathway |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU84840 | lncRNA | downstream | 32715 | 26464030 ~ 26464318 (-) | True | G71589 |
| TU84686 | lncRNA | downstream | 69659 | 26426258 ~ 26427374 (-) | True | G71474 |
| TU84680 | lncRNA | downstream | 81281 | 26407975 ~ 26415752 (-) | True | G71470 |
| TU84681 | lncRNA | downstream | 82539 | 26409175 ~ 26414494 (-) | True | G71471 |
| TU84679 | lncRNA | downstream | 84685 | 26402539 ~ 26412348 (-) | True | G71469 |
| TU84851 | lncRNA | upstream | 50827 | 26550094 ~ 26551030 (-) | True | G71596 |
| TU84896 | lncRNA | upstream | 58962 | 26558229 ~ 26559138 (-) | True | G71636 |
| TU84978 | lncRNA | upstream | 162592 | 26661859 ~ 26663778 (-) | True | G71693 |
| TU84981 | lncRNA | upstream | 166950 | 26666217 ~ 26666592 (-) | True | G71695 |
| TU84982 | lncRNA | upstream | 167796 | 26667063 ~ 26667730 (-) | True | G71696 |
| XM_026935883.2 | mRNA | downstream | 44202 | 26446458 ~ 26452831 (-) | True | si:dkeyp-66d1.7 |
| XM_034303639.1 | mRNA | downstream | 120625 | 26371921 ~ 26376408 (-) | True | ltb4r2b |
| XM_034303641.1 | mRNA | downstream | 129084 | 26338735 ~ 26367949 (-) | False | sdr39u1 |
| XM_026935989.2 | mRNA | upstream | 79527 | 26578794 ~ 26595990 (-) | False | sppl2 |
| XM_026935988.2 | mRNA | upstream | 79528 | 26578795 ~ 26595990 (-) | True | sppl2 |
| XM_026936649.2 | mRNA | upstream | 173480 | 26672747 ~ 26678848 (-) | True | ccnl1b |
| XM_026936093.2 | mRNA | upstream | 208815 | 26708082 ~ 26712304 (-) | True | slitrk3b |
| XM_034303683.1 | mRNA | upstream | 271315 | 26770582 ~ 26786518 (-) | True | copa |
| TU84653 | other | downstream | 120945 | 26373758 ~ 26376088 (-) | False | ltb4r2b |
| TU83344 | other | downstream | 2192107 | 24304374 ~ 24304926 (-) | True | G70255 |
| XR_003404116.1 | other | downstream | 2460179 | 24036718 ~ 24036854 (-) | True | LOC113540746 |
| LOC117597117 | other | downstream | 2965017 | 23531238 ~ 23532016 (-) | True | LOC117597117 |
| LOC113540013 | other | downstream | 2979363 | 23516930 ~ 23517670 (-) | True | LOC113540013 |
| TU84852 | other | upstream | 37835 | 26537102 ~ 26551030 (-) | False | G71596 |
| TU85159 | other | upstream | 597335 | 27096602 ~ 27100858 (-) | True | G71832 |
| TU85245 | other | upstream | 704516 | 27203783 ~ 27204186 (-) | True | G71909 |
| trnat-ugu_3 | other | upstream | 896090 | 27395357 ~ 27395429 (-) | True | trnat-ugu_3 |
| trnat-ugu_4 | other | upstream | 896884 | 27396151 ~ 27396223 (-) | True | trnat-ugu_4 |
