RNA id: XR_003404049.2


Basic Information

Item Value
RNA id XR_003404049.2
length 2384
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC113540593
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22926810 ~ 22938741 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAATTAGCATCTATCCAACAAGATGTACATTGTCTTGAGATCAATATTGACTTTTCCTCAGCAGGGCAGCTTAAATGCATTTTCGAAGAAGACTGCCAGTCGTATATGGATCGCTTAACACCACTGgcactctgtctttcttttagCCACAAGCAACTACAAAACTGTATAATGTTTCCACTGGCCGCCAAaaTACGTCAAGAGTTTGTATCTCAATCTGTAGTGGATCATGAATTTTTCATCACCATGCTTTGAGACACTAGGGAAATGAACAAAGCCAAGAAATGCAATAGGGAGATGCCTTCCTGATTCTCAGGGCACATTGAAATACTACAGTTGCCACTACCACAGCTTCTGGAAGTAGATGGATATTGCAGTTCAAAACCTGGTTGACTCTGCCAGTCAAGACTTGGCCATCGATGGATCATTCAAGATGATGACAGTAaccatatattttatttgaccATATACAAAACCTGGCTGATGTTGTAACTATGACCACACAGAATGTATTAATCTTGTATTCATTTTGAAGTCCATCAATGTCCAGTATGGTGTTACAACTATGATTAATGTACAACTATTAGTACGATATGTTTGGAGTGGTTGTCTTGCACAAAGCCTGGAATAATTATAAATAGGCATGAATCCAGGATACCTGAGCCAAAAGCAATAACCCACACAAGGACCATTGGTAAGCAACATCTATGAATGTAGCTGCTGCTAAGTGCTACTGAGATTTACATTTGGTTGGTCTGTCTTCAAGCTTCATGATTCAAGGTTATCTAACAGTATTAGTACCTTCCTGTATTCAGGCAAACAATAAAGCATCTGTGTtaagtaataaaacaatgtCCCTTTTGGGTTTGCCTTGGCATTAAGTCatattaatttagttttaaatcCTGCCCTTGGCGAGAAAATCTTGAGATGGCAATCCATTATTAGTGTATTTGCAAGATGAGCTCAGGGAATCACTCGACATCTATGTTTTTTCCCAATGAACAGCATCAGTGCCAAGTCAGACAGATGTACATCTCTGCAGTTCCTTTCCCGTCCTTTATTGGCACCCAGTGCTGCACTGGCAGTGGGCTTTAGCTGTGGCATGGCACTCCAGAAGAATGAGTCACACACTAGCTCTGCTACACACCAAAAAATCCCATGCTCCACCACAACAGTGAGCCCAAACTGCAAGGTGAATAGTTTGGACACTGATGAAAAGAAACTATTTTAACTCTGTTTTAATTACAAACAAGGGAGCTAGAAAAGCACTGATAGGAGGTGCTCATTTGCCATCGTCCATCTGTGCTCTCAATTAAGGCCCAAGAATTTTGCAATTTGCACAGACATTACCTTGAAAAGAGAACTAACCCAGTGCACACTGACTGCGTATCTTTAATAATCATTCTAATGCTAGCCATTGGTTTCATTTTGTTctgaatgagagatgagaggcATTAAAAAGAGTTAGTACAAGCTAGTATCGCATGCCATCCTACTATTTGGTTTCTTGGTTTTTGTTTGTGGATGCTTAGTGGGTATGTTATGGGTTCATTATTGCACAACATTAACCCTCTATGGTCCCAACTTATAATTCACTTAAagcattttgttcattaattacttatttattgtattaaaaaGCTACAGTTAGGAAATAGAAAGAGCCATGTGATTATGAGATTGAGGAAGGTAAATCTGTATGCCAGTATAATCTTTAGGTTTtaatatcactgtgtgtgttttgttttggtaatACGGTAGACTTATACATATCTCTTGGTTTTGGCAATCagttatttatcatattttagtGTATGTATTGAAATTGTGCTTTCTCAGATATGAAAAATAGGCCCCTTTTACCACTGTGTTTGCTCTGGAATGCTCCACCAAAACTACAGACCTGATGGTATCACCATGCTAAAGTCATACTGTTCCCATGGAAACTAGTTATTGCTACCTGAAACAAAGATGATCTCCAAAGGCAAATGTACTGACTTCAACAGGTTTCCTGCATCTTTGACTATCAAGACCTCCCTGGAAAGAGAGGAGTAGAAGACAGATTAATGGAGTGATTTTGTCTAAAGTGAATATATGGGCTGTCCTCCCTGAGATTACCTCTGCACTCAGCAGCTACAGAGGAGCATACAACCTTGTTTTTCACTGTCGCAACTTGCCCCCTGAGTTcatgcatatatgtatatatattccCCAGTTAAAATGTACAGGTTGGCCAAATTTATCTATAAGTTTTTCCTGAAAACAACTATAGTTggattttttcctgttttcaggAAAAACGTTTAGATAAGTTTGTGTACTGAAATACATGCTTTCCGCAcactaaaataatgaaaaataataggggtgtaatgcaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82061 lncRNA upstream 274363 22649943 ~ 22652447 (+) False LOC113540463
TU81842 lncRNA upstream 399254 22527328 ~ 22527556 (+) True G68999
TU81788 lncRNA upstream 529709 22392839 ~ 22397101 (+) True G68954
TU81789 lncRNA upstream 539065 22383094 ~ 22387745 (+) True G68955
TU81775 lncRNA upstream 681985 22244588 ~ 22244825 (+) True G68947
TU82192 lncRNA downstream 63257 23001998 ~ 23004102 (+) True G69294
TU82369 lncRNA downstream 345813 23284554 ~ 23284926 (+) True G69443
TU82375 lncRNA downstream 352669 23291410 ~ 23291998 (+) True G69449
TU82453 lncRNA downstream 392292 23331033 ~ 23331529 (+) True G69514
TU82463 lncRNA downstream 428920 23367661 ~ 23368677 (+) True G69522
XM_026936107.2 mRNA upstream 88971 22808862 ~ 22837839 (+) True lpin2
XM_026936106.2 mRNA upstream 88971 22812620 ~ 22837839 (+) False lpin2
XM_026936914.2 mRNA upstream 120876 22776639 ~ 22805934 (+) True myom1a
XM_026936916.2 mRNA upstream 120876 22776640 ~ 22805934 (+) False myom1a
XM_026936082.2 mRNA upstream 152056 22770973 ~ 22774754 (+) True bag1
XM_026936345.2 mRNA downstream 61170 22999911 ~ 23038154 (+) True yes1
XM_034303646.1 mRNA downstream 115759 23054500 ~ 23103788 (+) True LOC113540574
XM_026937129.2 mRNA downstream 166882 23105623 ~ 23109703 (+) True si:dkey-32m20.1
XM_026936910.2 mRNA downstream 185439 23124180 ~ 23144086 (+) True cacnb2b
XM_034303413.1 mRNA downstream 243129 23181870 ~ 23201969 (+) True si:ch211-106h4.4
XR_004578015.1 other upstream 1164509 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 379763 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1170054 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 1920285 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 2769086 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 2959394 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile