RNA id: XR_003404073.2


Basic Information

Item Value
RNA id XR_003404073.2
length 75
RNA type ncRNA
GC content 0.33
exon number 1
gene id LOC113540699
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21327346 ~ 21327420 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGCAATGAGGACAAcctatatattaaaatgattctCTGTATGAATTACAAATTATACGCTATTCTGAGCCGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81189 lncRNA upstream 5940 21321145 ~ 21321406 (+) False plag1
TU81190 lncRNA upstream 10831 21316255 ~ 21316515 (+) True G68435
TU80993 lncRNA upstream 93088 21234025 ~ 21234258 (+) True G68313
TU80981 lncRNA upstream 118022 21205745 ~ 21209324 (+) True G68304
TU80969 lncRNA upstream 138212 21188531 ~ 21189134 (+) True G68299
TU81294 lncRNA downstream 159554 21486974 ~ 21487488 (+) True G68523
TU81417 lncRNA downstream 405526 21732946 ~ 21749319 (+) True G68621
TU81415 lncRNA downstream 426688 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA downstream 426688 21754108 ~ 21762229 (+) False LOC113540377
TU81502 lncRNA downstream 587386 21914806 ~ 21917776 (+) True G68687
XM_026936593.2 mRNA upstream 3379 21314218 ~ 21323967 (+) True plag1
XM_026936594.2 mRNA upstream 3379 21314218 ~ 21323967 (+) False plag1
XM_026935823.2 mRNA upstream 23731 21298137 ~ 21303615 (+) True sdr16c5b
XM_026937031.2 mRNA upstream 39987 21283954 ~ 21287359 (+) False penkb
XM_026937030.2 mRNA upstream 39987 21283959 ~ 21287359 (+) True penkb
XM_026936369.2 mRNA downstream 2871 21330291 ~ 21337139 (+) True zgc:56231
XM_026936873.2 mRNA downstream 93165 21420585 ~ 21424078 (+) True lypla1
XM_026936931.2 mRNA downstream 131691 21459111 ~ 21465823 (+) True LOC113540433
XM_034303977.1 mRNA downstream 131714 21459134 ~ 21465823 (+) False LOC113540433
XM_026935852.2 mRNA downstream 147851 21475271 ~ 21480480 (+) True chmp5b
TU80896 other upstream 293593 21020258 ~ 21033753 (+) True G68232
trnaa-cgc other upstream 974861 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 1172575 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 1226248 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 1498456 19828819 ~ 19828890 (+) True trnah-gug_5
XR_004577949.1 other downstream 301656 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 301656 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 424996 21752416 ~ 21762301 (+) False LOC113540377
XR_004578017.1 other downstream 426598 21754018 ~ 21762301 (+) False LOC113540377
XR_003404030.2 other downstream 426660 21754080 ~ 21762301 (+) True LOC113540377