RNA id: XR_003404074.2


Basic Information

Item Value
RNA id XR_003404074.2
length 213
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id LOC113540700
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10041567 ~ 10041779 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGACTATACTTTCAGGGATCATTTCTATAGTCTCTAACTaggaaatgtgatttgaaaGCGTTACGTCTCTCTAATCACGATGATGAGTTTTGATGTATTTCTCTGAGCGTGAATCGGATTTTAGCTAGTGATTTTATCATGAGCTTTAGTCATTGATGAACGTTCTCTGTTTCTTATGGAACATGAGAGGAGAAGTACATGATCAGAGTGAT

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0051180 vitamin transport biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process
GO:0005520 insulin-like growth factor binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578135.1 lncRNA downstream 873 10040482 ~ 10040694 (-) True LOC117597227
XR_003404083.2 lncRNA downstream 1980 10039380 ~ 10039587 (-) True LOC113540709
XR_003404094.1 lncRNA downstream 2801 10038554 ~ 10038766 (-) True LOC113540720
XR_004577932.1 lncRNA downstream 3584 10026874 ~ 10037983 (-) True LOC117596979
XR_004577931.1 lncRNA downstream 3585 10030877 ~ 10037982 (-) False LOC117596979
TU73473 lncRNA upstream 28627 10070406 ~ 10073193 (-) True cxcl19
TU73517 lncRNA upstream 37148 10078927 ~ 10080217 (-) False LOC113540372
XR_004577927.1 lncRNA upstream 160452 10202231 ~ 10211232 (-) True LOC113540369
TU73581 lncRNA upstream 322233 10364012 ~ 10364892 (-) True G62108
TU73582 lncRNA upstream 326542 10368321 ~ 10370563 (-) True G62109
XM_034303217.1 mRNA downstream 17790 9997315 ~ 10023777 (-) False intu
XM_034303216.1 mRNA downstream 17792 9997315 ~ 10023775 (-) False intu
XM_034303215.1 mRNA downstream 20103 9997315 ~ 10021464 (-) False intu
XM_034303214.1 mRNA downstream 20103 9997315 ~ 10021464 (-) True intu
XM_034303262.1 mRNA downstream 48700 9980997 ~ 9992867 (-) False aadat
XM_034303271.1 mRNA upstream 4793 10046572 ~ 10053214 (-) False trmt10b
XM_034303270.1 mRNA upstream 4793 10046572 ~ 10053214 (-) False trmt10b
XM_026936792.2 mRNA upstream 4793 10046572 ~ 10053214 (-) True trmt10b
XM_026936815.2 mRNA upstream 29037 10070816 ~ 10073229 (-) False cxcl19
XM_034303281.1 mRNA upstream 36909 10078688 ~ 10080237 (-) True LOC113540372
TU73337 other downstream 3992 10027987 ~ 10037575 (-) False G61900
TU73432 other downstream 236249 9776278 ~ 9805318 (-) True G61972
TU73323 other downstream 512764 9526574 ~ 9528803 (-) False LOC113526752
TU72884 other downstream 702822 9337826 ~ 9338745 (-) True G61537
XR_003403995.2 other downstream 714136 9314849 ~ 9327431 (-) False LOC113540087
trnan-guu other upstream 432617 10474396 ~ 10474470 (-) True trnan-guu
trnan-guu_1 other upstream 433844 10475623 ~ 10475696 (-) True trnan-guu_1
trnan-guu_2 other upstream 435079 10476858 ~ 10476930 (-) True trnan-guu_2
trnan-guu_3 other upstream 437520 10479299 ~ 10479372 (-) True trnan-guu_3
trnan-guu_4 other upstream 438738 10480517 ~ 10480591 (-) True trnan-guu_4

Expression Profile