Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003404089.2 |
| length | 212 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 1 |
| gene id | LOC113540715 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 9620215 ~ 9620426 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004578138.1 | lncRNA | downstream | 4008 | 9615995 ~ 9616207 (-) | True | LOC117597230 |
| XR_004578136.1 | lncRNA | downstream | 6155 | 9613854 ~ 9614060 (-) | True | LOC117597228 |
| XR_004578148.1 | lncRNA | downstream | 6735 | 9613268 ~ 9613480 (-) | True | LOC117597239 |
| TU73333 | lncRNA | downstream | 6755 | 9604576 ~ 9613460 (-) | True | G61899 |
| XR_003404084.2 | lncRNA | downstream | 8207 | 9611801 ~ 9612008 (-) | True | LOC113540710 |
| XR_003404080.2 | lncRNA | upstream | 287 | 9620713 ~ 9620919 (-) | True | LOC113540706 |
| TU73388 | lncRNA | upstream | 63604 | 9684030 ~ 9723952 (-) | True | G61934 |
| TU73387 | lncRNA | upstream | 74238 | 9694664 ~ 9723952 (-) | False | G61934 |
| TU73421 | lncRNA | upstream | 130395 | 9750821 ~ 9752285 (-) | True | G61967 |
| TU73422 | lncRNA | upstream | 130395 | 9750821 ~ 9752285 (-) | False | G61967 |
| XM_034303884.1 | mRNA | downstream | 48751 | 9533997 ~ 9571464 (-) | False | capn1 |
| XM_026935986.2 | mRNA | downstream | 135614 | 9474178 ~ 9484601 (-) | True | LOC113539885 |
| XM_026936422.2 | mRNA | upstream | 262285 | 9882711 ~ 9889757 (-) | True | zgc:101810 |
| XM_034303449.1 | mRNA | upstream | 271925 | 9892351 ~ 9896258 (-) | False | six7 |
| XM_026937032.2 | mRNA | upstream | 271925 | 9892351 ~ 9896256 (-) | True | six7 |
| XM_026935933.2 | mRNA | upstream | 287133 | 9907559 ~ 9911772 (-) | True | b4gat1 |
| XM_026937084.2 | mRNA | upstream | 293808 | 9914234 ~ 9919791 (-) | True | pfdn2 |
| TU73323 | other | downstream | 91412 | 9526574 ~ 9528803 (-) | False | LOC113526752 |
| TU72884 | other | downstream | 281470 | 9337826 ~ 9338745 (-) | True | G61537 |
| XR_003403995.2 | other | downstream | 292784 | 9314849 ~ 9327431 (-) | False | LOC113540087 |
| TU72820 | other | downstream | 635762 | 8983234 ~ 8984453 (-) | True | G61478 |
| XR_004578041.1 | other | downstream | 1041365 | 8575506 ~ 8578850 (-) | False | LOC113526753 |
| TU73432 | other | upstream | 155852 | 9776278 ~ 9805318 (-) | True | G61972 |
| TU73337 | other | upstream | 407561 | 10027987 ~ 10037575 (-) | False | G61900 |
| trnan-guu | other | upstream | 853970 | 10474396 ~ 10474470 (-) | True | trnan-guu |
| trnan-guu_1 | other | upstream | 855197 | 10475623 ~ 10475696 (-) | True | trnan-guu_1 |
| trnan-guu_2 | other | upstream | 856432 | 10476858 ~ 10476930 (-) | True | trnan-guu_2 |
