RNA id: XR_003404110.1


Basic Information

Item Value
RNA id XR_003404110.1
length 65
RNA type ncRNA
GC content 0.43
exon number 1
gene id LOC113540740
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16760519 ~ 16760583 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCGGTGATGAAGATACTTAGCTCACTTTGACCCACTGTGAAAAGTTACGAACACCTGAGAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77752 lncRNA upstream 8429 16751860 ~ 16752090 (+) True G65654
TU77740 lncRNA upstream 31167 16723895 ~ 16729352 (+) True G65644
TU77739 lncRNA upstream 83153 16676529 ~ 16677366 (+) True G65643
TU77679 lncRNA upstream 166062 16592447 ~ 16594457 (+) True G65601
TU77650 lncRNA upstream 182782 16569687 ~ 16577737 (+) True G65580
TU77765 lncRNA downstream 10022 16770605 ~ 16770843 (+) True G65663
TU78081 lncRNA downstream 574914 17335497 ~ 17392798 (+) True arrb2b
TU78094 lncRNA downstream 596755 17357338 ~ 17372139 (+) True G65938
TU78095 lncRNA downstream 597903 17358486 ~ 17359569 (+) True G65939
TU78075 lncRNA downstream 641976 17402559 ~ 17403879 (+) True G65927
XM_026936987.2 mRNA upstream 5112 16752137 ~ 16755407 (+) False sb:cb1058
XM_026936986.2 mRNA upstream 5112 16752820 ~ 16755407 (+) True sb:cb1058
XM_026935935.2 mRNA upstream 10395 16746698 ~ 16750124 (+) True b3gat3
XM_026937065.2 mRNA upstream 15162 16736078 ~ 16745357 (+) True naa40
XM_026937064.2 mRNA upstream 17266 16736067 ~ 16743253 (+) False naa40
XM_026937051.2 mRNA downstream 11816 16772399 ~ 16776829 (+) True batf2
XM_026937052.2 mRNA downstream 11816 16772399 ~ 16776829 (+) False batf2
XM_026937161.2 mRNA downstream 16311 16776894 ~ 16804016 (+) True ppp2r5b
XM_026936126.2 mRNA downstream 50817 16811400 ~ 16818534 (+) False zgc:101765
XM_034303409.1 mRNA downstream 55215 16815798 ~ 16818534 (+) False zgc:101765
XR_003404046.2 other upstream 389835 16367956 ~ 16370684 (+) False LOC113540582
XR_004578074.1 other upstream 441353 16310213 ~ 16319166 (+) False LOC113539780
XR_003403994.2 other upstream 720535 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 2101583 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 2491179 14255744 ~ 14269340 (+) False brms1
XR_003404111.1 other downstream 166 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 398 16760981 ~ 16761107 (+) True LOC113540745
XR_003404113.1 other downstream 683 16761266 ~ 16761338 (+) True LOC113540743
XR_003404114.1 other downstream 989 16761572 ~ 16761647 (+) True LOC113540744
XR_003404112.1 other downstream 1221 16761804 ~ 16761875 (+) True LOC113540742