RNA id: XR_003404113.1


Basic Information

Item Value
RNA id XR_003404113.1
length 73
RNA type ncRNA
GC content 0.44
exon number 1
gene id LOC113540743
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16761266 ~ 16761338 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctGAAGAGATGATGAGTAATTTATACCGCCCCAGTCTGATTGTGATCTGACTGATTGGTACCCCTCTGATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77752 lncRNA upstream 9176 16751860 ~ 16752090 (+) True G65654
TU77740 lncRNA upstream 31914 16723895 ~ 16729352 (+) True G65644
TU77739 lncRNA upstream 83900 16676529 ~ 16677366 (+) True G65643
TU77679 lncRNA upstream 166809 16592447 ~ 16594457 (+) True G65601
TU77650 lncRNA upstream 183529 16569687 ~ 16577737 (+) True G65580
TU77765 lncRNA downstream 9267 16770605 ~ 16770843 (+) True G65663
TU78081 lncRNA downstream 574159 17335497 ~ 17392798 (+) True arrb2b
TU78094 lncRNA downstream 596000 17357338 ~ 17372139 (+) True G65938
TU78095 lncRNA downstream 597148 17358486 ~ 17359569 (+) True G65939
TU78075 lncRNA downstream 641221 17402559 ~ 17403879 (+) True G65927
XM_026936987.2 mRNA upstream 5859 16752137 ~ 16755407 (+) False sb:cb1058
XM_026936986.2 mRNA upstream 5859 16752820 ~ 16755407 (+) True sb:cb1058
XM_026935935.2 mRNA upstream 11142 16746698 ~ 16750124 (+) True b3gat3
XM_026937065.2 mRNA upstream 15909 16736078 ~ 16745357 (+) True naa40
XM_034303619.1 mRNA upstream 18015 16736070 ~ 16743251 (+) False naa40
XM_026937051.2 mRNA downstream 11061 16772399 ~ 16776829 (+) True batf2
XM_026937052.2 mRNA downstream 11061 16772399 ~ 16776829 (+) False batf2
XM_026937161.2 mRNA downstream 15556 16776894 ~ 16804016 (+) True ppp2r5b
XM_026936126.2 mRNA downstream 50062 16811400 ~ 16818534 (+) False zgc:101765
XM_034303409.1 mRNA downstream 54460 16815798 ~ 16818534 (+) False zgc:101765
XR_003404115.1 other upstream 159 16760981 ~ 16761107 (+) True LOC113540745
XR_003404111.1 other upstream 447 16760749 ~ 16760819 (+) True LOC113540741
XR_003404110.1 other upstream 683 16760519 ~ 16760583 (+) True LOC113540740
XR_003404046.2 other upstream 390582 16367956 ~ 16370684 (+) False LOC113540582
XR_004578074.1 other upstream 442100 16310213 ~ 16319166 (+) False LOC113539780
XR_003404114.1 other downstream 234 16761572 ~ 16761647 (+) True LOC113540744
XR_003404112.1 other downstream 466 16761804 ~ 16761875 (+) True LOC113540742
TU78354 other downstream 848366 17609704 ~ 17620079 (+) True LOC113539940
trnat-agu other downstream 1003123 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 1238820 18000158 ~ 18010962 (+) False ctdnep1b