RNA id: XR_003404116.1


Basic Information

Item Value
RNA id XR_003404116.1
length 137
RNA type ncRNA
GC content 0.46
exon number 1
gene id LOC113540746
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24036718 ~ 24036854 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCCATTTCTTGGCATACATGCAGTTGCTCAGTACTCATGTGTGTAATGTCAGGAGGTAAAGCAGAGCCAGTGCTATGTCTTCGGTGCCAGTATGTTCAGAGTATGCTGGTTCTATCCTCAATCACTGAAACACTC

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578012.1 lncRNA downstream 104483 23931333 ~ 23932235 (-) True LOC117597086
TU82956 lncRNA downstream 114180 23922106 ~ 23922538 (-) True G69916
TU82692 lncRNA downstream 384852 23651051 ~ 23651866 (-) True G69691
TU82643 lncRNA downstream 442174 23594331 ~ 23594544 (-) True G69649
TU82581 lncRNA downstream 582497 23453233 ~ 23454221 (-) True LOC113540115
TU83094 lncRNA upstream 101439 24138293 ~ 24138492 (-) True G70025
TU83095 lncRNA upstream 108724 24145578 ~ 24145784 (-) True G70026
TU83096 lncRNA upstream 109036 24145890 ~ 24146241 (-) True G70027
TU83122 lncRNA upstream 142177 24179031 ~ 24179864 (-) True G70044
TU83444 lncRNA upstream 529347 24566201 ~ 24566511 (-) False ccdc24
XM_034303442.1 mRNA downstream 26854 24007688 ~ 24009864 (-) True LOC113540038
XM_026936666.2 mRNA downstream 34854 23987804 ~ 24001864 (-) False fastk
XM_026936665.2 mRNA downstream 34854 23987804 ~ 24001864 (-) True fastk
XM_026935833.2 mRNA downstream 54713 23974747 ~ 23982005 (-) True tmub1
XM_034303202.1 mRNA downstream 54920 23974747 ~ 23981798 (-) False tmub1
XM_026936941.2 mRNA upstream 8880 24045734 ~ 24084282 (-) True nrbp2a
XM_034304058.1 mRNA upstream 73618 24110472 ~ 24115423 (-) False bfsp2
XM_026937208.2 mRNA upstream 73618 24110472 ~ 24115423 (-) True bfsp2
XM_026936857.2 mRNA upstream 102945 24139799 ~ 24145026 (-) True LOC113540393
XM_034303195.1 mRNA upstream 111718 24148572 ~ 24161793 (-) True prpf4ba
LOC117597117 other downstream 504702 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 519048 23516930 ~ 23517670 (-) True LOC113540013
LOC113540114 other downstream 520359 23515699 ~ 23516359 (-) True LOC113540114
LOC117597116 other downstream 521783 23514374 ~ 23514935 (-) True LOC117597116
LOC113540012 other downstream 522679 23513456 ~ 23514039 (-) True LOC113540012
TU83344 other upstream 267520 24304374 ~ 24304926 (-) True G70255
TU84653 other upstream 2336904 26373758 ~ 26376088 (-) False ltb4r2b
TU84853 other upstream 2435226 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 2500248 26537102 ~ 26551030 (-) False G71596
TU85159 other upstream 3059748 27096602 ~ 27100858 (-) True G71832

Expression Profile