Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577913.1 |
| length | 381 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 4 |
| gene id | LOC117596963 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 32202081 ~ 32202854 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU88439 | lncRNA | downstream | 1277 | 32200365 ~ 32200804 (-) | True | G74622 |
| TU88436 | lncRNA | downstream | 37667 | 32164054 ~ 32164414 (-) | True | G74619 |
| XR_004577914.1 | lncRNA | downstream | 89670 | 32111586 ~ 32112411 (-) | True | LOC113540655 |
| XR_004578081.1 | lncRNA | downstream | 292167 | 31908648 ~ 31909914 (-) | False | LOC117597178 |
| TU88457 | lncRNA | upstream | 424707 | 32627561 ~ 32627996 (-) | True | G74640 |
| XR_004577912.1 | lncRNA | upstream | 444427 | 32647281 ~ 32648098 (-) | True | LOC117596962 |
| TU88463 | lncRNA | upstream | 448933 | 32651787 ~ 32652241 (-) | True | G74646 |
| TU88464 | lncRNA | upstream | 456678 | 32659532 ~ 32659961 (-) | True | G74647 |
| XR_004577920.1 | lncRNA | upstream | 564734 | 32767588 ~ 32769282 (-) | True | LOC117596968 |
| XM_026935889.2 | mRNA | downstream | 474529 | 31710064 ~ 31727552 (-) | True | nmnat2 |
| XM_034303857.1 | mRNA | downstream | 657447 | 31538539 ~ 31544634 (-) | True | LOC113540064 |
| XM_026936953.2 | mRNA | downstream | 668823 | 31528370 ~ 31533258 (-) | True | psmb5 |
| XM_034304039.1 | mRNA | downstream | 732440 | 31379473 ~ 31469641 (-) | False | LOC113540461 |
| XM_034303863.1 | mRNA | upstream | 620704 | 32823558 ~ 32825567 (-) | True | LOC117597140 |
| XM_034303864.1 | mRNA | upstream | 769931 | 32972785 ~ 32977700 (-) | True | LOC117597141 |
| XM_026912180.2 | mRNA | upstream | 928233 | 33131087 ~ 33135775 (-) | False | c4h14orf119 |
| XM_026912181.2 | mRNA | upstream | 928233 | 33131087 ~ 33135467 (-) | False | c4h14orf119 |
| XM_026912179.2 | mRNA | upstream | 928233 | 33131087 ~ 33134319 (-) | True | c4h14orf119 |
| LOC117597125 | other | downstream | 23957 | 32175807 ~ 32178124 (-) | True | LOC117597125 |
| LOC117596948 | other | downstream | 26671 | 32174918 ~ 32175410 (-) | True | LOC117596948 |
| LOC113540132 | other | downstream | 32845 | 32168582 ~ 32169236 (-) | True | LOC113540132 |
| TU88432 | other | downstream | 52284 | 32149195 ~ 32149797 (-) | True | G74615 |
| LOC117596956 | other | downstream | 57138 | 32144459 ~ 32144943 (-) | True | LOC117596956 |
| TU88440 | other | upstream | 540 | 32203394 ~ 32203905 (-) | True | LOC117596946 |
| LOC117596946 | other | upstream | 541 | 32203395 ~ 32203898 (-) | False | LOC117596946 |
| LOC117596950 | other | upstream | 430359 | 32633213 ~ 32633711 (-) | True | LOC117596950 |
| TU88461 | other | upstream | 441170 | 32644024 ~ 32644534 (-) | True | G74644 |
| LOC117597135 | other | upstream | 455507 | 32658361 ~ 32658922 (-) | True | LOC117597135 |
