Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577914.1 |
| length | 432 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 4 |
| gene id | LOC113540655 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 32111586 ~ 32112411 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004578081.1 | lncRNA | downstream | 201672 | 31908648 ~ 31909914 (-) | False | LOC117597178 |
| XR_004578080.1 | lncRNA | downstream | 201672 | 31908648 ~ 31909914 (-) | False | LOC117597178 |
| XR_004578079.1 | lncRNA | downstream | 201672 | 31908648 ~ 31909914 (-) | True | LOC117597178 |
| TU88356 | lncRNA | downstream | 210029 | 31893851 ~ 31901557 (-) | True | G74553 |
| TU88244 | lncRNA | downstream | 325829 | 31736292 ~ 31785757 (-) | True | G74458 |
| TU88436 | lncRNA | upstream | 51643 | 32164054 ~ 32164414 (-) | True | G74619 |
| TU88439 | lncRNA | upstream | 87954 | 32200365 ~ 32200804 (-) | True | G74622 |
| XR_004577913.1 | lncRNA | upstream | 89670 | 32202081 ~ 32202854 (-) | True | LOC117596963 |
| TU88457 | lncRNA | upstream | 515150 | 32627561 ~ 32627996 (-) | True | G74640 |
| XR_004577912.1 | lncRNA | upstream | 534870 | 32647281 ~ 32648098 (-) | True | LOC117596962 |
| XM_026935889.2 | mRNA | downstream | 384034 | 31710064 ~ 31727552 (-) | True | nmnat2 |
| XM_034303857.1 | mRNA | downstream | 566952 | 31538539 ~ 31544634 (-) | True | LOC113540064 |
| XM_026936953.2 | mRNA | downstream | 578328 | 31528370 ~ 31533258 (-) | True | psmb5 |
| XM_034304039.1 | mRNA | downstream | 641945 | 31379473 ~ 31469641 (-) | False | LOC113540461 |
| XM_034303863.1 | mRNA | upstream | 711147 | 32823558 ~ 32825567 (-) | True | LOC117597140 |
| XM_034303864.1 | mRNA | upstream | 860374 | 32972785 ~ 32977700 (-) | True | LOC117597141 |
| XM_026912180.2 | mRNA | upstream | 1018676 | 33131087 ~ 33135775 (-) | False | c4h14orf119 |
| XM_026912181.2 | mRNA | upstream | 1018676 | 33131087 ~ 33135467 (-) | False | c4h14orf119 |
| XM_026912179.2 | mRNA | upstream | 1018676 | 33131087 ~ 33134319 (-) | True | c4h14orf119 |
| LOC117596957 | other | downstream | 36698 | 32074388 ~ 32074888 (-) | False | LOC117596957 |
| TU88423 | other | downstream | 44249 | 32066812 ~ 32067337 (-) | True | G74607 |
| LOC117597180 | other | downstream | 179523 | 31931305 ~ 31932063 (-) | True | LOC117597180 |
| LOC117597121 | other | downstream | 200612 | 31905626 ~ 31910974 (-) | True | LOC117597121 |
| LOC117597011 | other | downstream | 227979 | 31882943 ~ 31883607 (-) | True | LOC117597011 |
| LOC117595679 | other | upstream | 13161 | 32125572 ~ 32126462 (-) | True | LOC117595679 |
| TU88430 | other | upstream | 19540 | 32131951 ~ 32132467 (-) | True | LOC117596961 |
| LOC117596961 | other | upstream | 19550 | 32131961 ~ 32132436 (-) | False | LOC117596961 |
| LOC117596956 | other | upstream | 32048 | 32144459 ~ 32144943 (-) | True | LOC117596956 |
| TU88432 | other | upstream | 36784 | 32149195 ~ 32149797 (-) | True | G74615 |
