RNA id: XR_004577918.1



Basic Information


Item Value
RNA id XR_004577918.1
length 533
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC117596966
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32871746 ~ 32873023 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CATCCATTCGTTAAGGCATGTTTGCTCCACGGAGTTTCCTTAAAATCAGacagtttcctccaggttctctggtttcctcccacctcccattaacatgcagGATCCTGCAGCTGATCCAGTTGAGCTGGAATGAGGCAAGTCTTCTGGGGTTGTGGAAAGCCAGAGCACTTGACTACGCCTAAGTAAAAGTGGGAGGAGCTAGATGTGCAGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGTCATATCTTCAAGTGAAGACAGCAGCaccacactgacctgcacataTGATCAATCAGCTGACTATCTCTACTGGTATCAACAAAACCCTCAATCAGGACCAGAGTTTCTGCTGAGCATTATTATATCTACAGAAACTGTCACTAAAGCTGAACAACTTGACCCAAGACTATCCACCAGACTGCGTAAAAATGAGAGGAAAGTAGATCTGGAGATCTTTCCTGCTGCAGTATCAGACTCTTCACTGTACTACTGCGCCATGGAGCCCACAGtaacaggaaacacaact

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU88526 lncRNA downstream 9087 32862207 ~ 32862659 (-) True G74702
XR_004577919.1 lncRNA downstream 20371 32849927 ~ 32851375 (-) True LOC117596967
XR_004577920.1 lncRNA downstream 102464 32767588 ~ 32769282 (-) True LOC117596968
TU88464 lncRNA downstream 211785 32659532 ~ 32659961 (-) True G74647
TU88463 lncRNA downstream 219505 32651787 ~ 32652241 (-) True G74646
XR_004578073.1 lncRNA upstream 73111 32946134 ~ 32947158 (-) True LOC117597171
TU88542 lncRNA upstream 152398 33025421 ~ 33025846 (-) True G74717
TU88545 lncRNA upstream 158019 33031042 ~ 33031426 (-) True G74720
TU88554 lncRNA upstream 184937 33057960 ~ 33058362 (-) False LOC117597193
TU88557 lncRNA upstream 209516 33082539 ~ 33082974 (-) False LOC117597189
XM_034303863.1 mRNA downstream 46179 32823558 ~ 32825567 (-) True LOC117597140
XM_026935889.2 mRNA downstream 1144194 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1327112 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1338488 31528370 ~ 31533258 (-) True psmb5
XM_034304040.1 mRNA downstream 1415223 31379473 ~ 31456523 (-) False LOC113540461
XM_034303864.1 mRNA upstream 99762 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 258064 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 258064 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 258064 33131087 ~ 33134319 (-) True c4h14orf119
XM_026912175.2 mRNA upstream 292919 33165942 ~ 33168027 (-) False cbln12
TU88528 other downstream 3280 32865946 ~ 32868466 (-) False G74703
TU88527 other downstream 5285 32865946 ~ 32866461 (-) True G74703
LOC117596934 other downstream 26476 32844101 ~ 32845270 (-) True LOC117596934
LOC117596924 other downstream 36024 32835039 ~ 32835722 (-) True LOC117596924
LOC113540133 other downstream 55465 32815429 ~ 32816281 (-) True LOC113540133
TU88533 other upstream 73158 32946181 ~ 32946800 (-) False LOC117597171
LOC117597170 other upstream 76811 32949834 ~ 32950494 (-) True LOC117597170
LOC117597177 other upstream 97981 32971004 ~ 32971513 (-) True LOC117597177
LOC117597142 other upstream 123333 32996356 ~ 32996892 (-) True LOC117597142
LOC117597007 other upstream 159995 33033018 ~ 33033661 (-) True LOC117597007

Expression Profile