Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577919.1 |
| length | 261 |
| lncRNA type | inter_gene |
| GC content | 0.49 |
| exon number | 3 |
| gene id | LOC117596967 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 32849927 ~ 32851375 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577920.1 | lncRNA | downstream | 80645 | 32767588 ~ 32769282 (-) | True | LOC117596968 |
| TU88464 | lncRNA | downstream | 189966 | 32659532 ~ 32659961 (-) | True | G74647 |
| TU88463 | lncRNA | downstream | 197686 | 32651787 ~ 32652241 (-) | True | G74646 |
| XR_004577912.1 | lncRNA | downstream | 201829 | 32647281 ~ 32648098 (-) | True | LOC117596962 |
| TU88457 | lncRNA | downstream | 221931 | 32627561 ~ 32627996 (-) | True | G74640 |
| TU88526 | lncRNA | upstream | 10832 | 32862207 ~ 32862659 (-) | True | G74702 |
| XR_004577918.1 | lncRNA | upstream | 20371 | 32871746 ~ 32873023 (-) | True | LOC117596966 |
| XR_004578073.1 | lncRNA | upstream | 94759 | 32946134 ~ 32947158 (-) | True | LOC117597171 |
| TU88542 | lncRNA | upstream | 174046 | 33025421 ~ 33025846 (-) | True | G74717 |
| TU88545 | lncRNA | upstream | 179667 | 33031042 ~ 33031426 (-) | True | G74720 |
| XM_034303863.1 | mRNA | downstream | 24360 | 32823558 ~ 32825567 (-) | True | LOC117597140 |
| XM_026935889.2 | mRNA | downstream | 1122375 | 31710064 ~ 31727552 (-) | True | nmnat2 |
| XM_034303857.1 | mRNA | downstream | 1305293 | 31538539 ~ 31544634 (-) | True | LOC113540064 |
| XM_026936953.2 | mRNA | downstream | 1316669 | 31528370 ~ 31533258 (-) | True | psmb5 |
| XM_034304039.1 | mRNA | downstream | 1380286 | 31379473 ~ 31469641 (-) | False | LOC113540461 |
| XM_034303864.1 | mRNA | upstream | 121410 | 32972785 ~ 32977700 (-) | True | LOC117597141 |
| XM_026912180.2 | mRNA | upstream | 279712 | 33131087 ~ 33135775 (-) | False | c4h14orf119 |
| XM_026912181.2 | mRNA | upstream | 279712 | 33131087 ~ 33135467 (-) | False | c4h14orf119 |
| XM_026912179.2 | mRNA | upstream | 279712 | 33131087 ~ 33134319 (-) | True | c4h14orf119 |
| XM_026912175.2 | mRNA | upstream | 314567 | 33165942 ~ 33168027 (-) | False | cbln12 |
| LOC117596934 | other | downstream | 4657 | 32844101 ~ 32845270 (-) | True | LOC117596934 |
| LOC117596924 | other | downstream | 14205 | 32835039 ~ 32835722 (-) | True | LOC117596924 |
| LOC113540133 | other | downstream | 33646 | 32815429 ~ 32816281 (-) | True | LOC113540133 |
| LOC117597139 | other | downstream | 38192 | 32810432 ~ 32811735 (-) | True | LOC117597139 |
| LOC117596923 | other | downstream | 39631 | 32809596 ~ 32810296 (-) | True | LOC117596923 |
| TU88527 | other | upstream | 14571 | 32865946 ~ 32866461 (-) | True | G74703 |
| TU88528 | other | upstream | 14571 | 32865946 ~ 32868466 (-) | False | G74703 |
| TU88533 | other | upstream | 94806 | 32946181 ~ 32946800 (-) | False | LOC117597171 |
| LOC117597170 | other | upstream | 98459 | 32949834 ~ 32950494 (-) | True | LOC117597170 |
| LOC117597177 | other | upstream | 119629 | 32971004 ~ 32971513 (-) | True | LOC117597177 |
