RNA id: XR_004577920.1


Basic Information

Item Value
RNA id XR_004577920.1
length 507
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC117596968
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32767588 ~ 32769282 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcgttcTTTTGTTATTAGATTAAGGGTGAAAGATCATCCGGAAGAATATTCCcgtgtttatttttctcaagTTCAGTGATGCAGTTATAAGTCATATTATTCGTTTGAAATTCGGAAGAAGACACccgtgtttattttattaattcgtTGTAAAGTATCACggtggtgtgtgtagtttggAGTTGTGTCACCTGCGTGATAACCGTCTTTTACGAGACTGAGAGATAGTCGAGTCAAGGTTGGGAGGTGGAAGAGGATTTTCACGGATTCATCTGACCTGTTCCAGGCGGGAGGCGTCACGGAGGCTGTGCTTTTCAGCTCATCGTGCATTGAGGGTCAGCGATTATTATTCCGCAAGTGAAATCTAGTTTCTCCTGGATTCCTCTTACTGATGTTGcagaggcTGTAGATGAGCTCATTAAACCAGACCAAACCATCATACCTTCACGTGAAGGCAGCAGCaccacactgacctgcacataTGATGACTCGGCTCTCTATCTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88464 lncRNA downstream 107627 32659532 ~ 32659961 (-) True G74647
TU88463 lncRNA downstream 115347 32651787 ~ 32652241 (-) True G74646
XR_004577912.1 lncRNA downstream 119490 32647281 ~ 32648098 (-) True LOC117596962
TU88457 lncRNA downstream 139592 32627561 ~ 32627996 (-) True G74640
XR_004577913.1 lncRNA downstream 564734 32202081 ~ 32202854 (-) True LOC117596963
XR_004577919.1 lncRNA upstream 80645 32849927 ~ 32851375 (-) True LOC117596967
TU88526 lncRNA upstream 92925 32862207 ~ 32862659 (-) True G74702
XR_004577918.1 lncRNA upstream 102464 32871746 ~ 32873023 (-) True LOC117596966
XR_004578073.1 lncRNA upstream 176852 32946134 ~ 32947158 (-) True LOC117597171
TU88542 lncRNA upstream 256139 33025421 ~ 33025846 (-) True G74717
XM_026935889.2 mRNA downstream 1040036 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1222954 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1234330 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 1297947 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 54276 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 203503 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 361805 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 361805 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 361805 33131087 ~ 33134319 (-) True c4h14orf119
TU88466 other downstream 102168 32664898 ~ 32665420 (-) False LOC117596929
TU88467 other downstream 105112 32661983 ~ 32662476 (-) False LOC117596929
LOC117596929 other downstream 105121 32661892 ~ 32662467 (-) True LOC117596929
LOC117597135 other downstream 108666 32658361 ~ 32658922 (-) True LOC117597135
TU88461 other downstream 123054 32644024 ~ 32644534 (-) True G74644
LOC117596927 other upstream 7684 32776966 ~ 32777798 (-) True LOC117596927
LOC117596938 other upstream 34272 32803554 ~ 32804222 (-) True LOC117596938
LOC117596923 other upstream 40314 32809596 ~ 32810296 (-) True LOC117596923
LOC117597139 other upstream 41150 32810432 ~ 32811735 (-) True LOC117597139
LOC113540133 other upstream 46147 32815429 ~ 32816281 (-) True LOC113540133

Expression Profile