RNA id: XR_004577921.1


Basic Information

Item Value
RNA id XR_004577921.1
length 825
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC117596969
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32738103 ~ 32740111 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAACGCAGTTGTGTTTTTTCGGGGGTAGTCAGAGAAGTTTGGGGTGGAAAGAATGACTTTTCACCGCGAAGAAAGCTCGCAGCCGTCACATTCACGGACGTCTTGAGTGGCAGGCTCTGTGGAGAAAGTCTTCTGTGAGTTATTTCAGCATGAATGCATCAGTTCACAGCTCGCCGCACGAGAGAGCGCTGTGTGAGAGTTCGAAGGAGGCTGCACGCACCCCAGCCTCGCGTGAGTCCGCTGCGGAAGAAACCCAGTACGAGGATATTCCCCGTGAGAAAGTCTCTTTTACGGTTCGtaacgacttttttttttcttcgttcTTTTGTTATTAGATTAAGGGTGAAAGATCATCCGGAAGAATATTCCcgtgtttatttttctcaagTTCAGTGATGCAGTTATAAGTCATATTATTCGTTTGAAATTCGGAAGAAGACACccgtgtttattttattaattcgtTGTAAAGTATCACggtggtgtgtgtagtttggAGTTGTGTCACCTGCGTGATAACCGTCTTTTACGAGACTGAGAGATAGTCGAGTCAAGGTTGGGAGGTGGAAGAGGATTTTCACGGATTCATCTGACCTGTTCCAGGCGGGAGGCGTCACGGAGGCTGTGCTTTTCAGCTCATCGTGCATTGAGGGTCAGCGATTATTATTCCGCAAGTGAAATCTAGTTTCTCCTGGATTCCTCTTACTGATGTTGcagaggCTGTAGATGAGCTCATTAAACCAGACCAAACCATCATACCTTCACGTGAAGGCAGCAGCaccacactgacctgcacataTGATGACTCGGCTCTCTATCTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88477 lncRNA upstream 30605 32707093 ~ 32707498 (+) True G74655
XR_004577916.1 lncRNA upstream 48080 32689426 ~ 32690023 (+) True LOC117596965
XR_004577915.1 lncRNA upstream 204497 32532846 ~ 32533606 (+) True LOC117596964
TU88396 lncRNA upstream 398029 32318432 ~ 32340074 (+) True G74580
TU88394 lncRNA upstream 441569 32284208 ~ 32296534 (+) True G74578
TU88495 lncRNA downstream 156693 32896804 ~ 32924735 (+) True G74672
TU88499 lncRNA downstream 175429 32915540 ~ 32915973 (+) True G74676
TU88509 lncRNA downstream 283865 33023976 ~ 33024331 (+) True G74686
TU88574 lncRNA downstream 385557 33125668 ~ 33125884 (+) True G74747
TU88585 lncRNA downstream 389932 33130043 ~ 33135759 (+) True mmp14b
XM_034303860.1 mRNA upstream 418196 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 632812 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 394244 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 396940 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 434363 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 434363 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 434363 33174474 ~ 33249659 (+) False chd8
LOC117597137 other upstream 1832 32721824 ~ 32736271 (+) True LOC117597137
LOC117596949 other upstream 17639 32719964 ~ 32720464 (+) True LOC117596949
TU88479 other upstream 17671 32713173 ~ 32720432 (+) False LOC117596949
TU88480 other upstream 17671 32719956 ~ 32720432 (+) False LOC117596949
LOC117596943 other upstream 22580 32714954 ~ 32715523 (+) True LOC117596943
TU88484 other downstream 2154 32742265 ~ 32742970 (+) True LOC117596925
LOC117596925 other downstream 2360 32742471 ~ 32743137 (+) False LOC117596925
LOC117597138 other downstream 5389 32745500 ~ 32747793 (+) True LOC117597138
LOC117596944 other downstream 140600 32880711 ~ 32881365 (+) True LOC117596944
XR_004577922.1 other downstream 186505 32926616 ~ 32927014 (+) True LOC117596970

Expression Profile