RNA id: XR_004577922.1


Basic Information

Item Value
RNA id XR_004577922.1
length 150
RNA type ncRNA
GC content 0.49
exon number 3
gene id LOC117596970
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32926616 ~ 32927014 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTGATCCAGTTGAGCTGGAATGAGGCAAGTCTTCTGGGGTTGTGGAAAGCCAGAGCACTTGACTACGCCTAAGTAAAAGTGGGAGGAGCTAGATGTGCTGTTAAAAACATTGCAGGTGCTGTTGACAGCAGCATTACACCAGACCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88495 lncRNA upstream 1881 32896804 ~ 32924735 (+) True G74672
TU88499 lncRNA upstream 10643 32915540 ~ 32915973 (+) True G74676
XR_004577921.1 lncRNA upstream 186505 32738103 ~ 32740111 (+) True LOC117596969
TU88477 lncRNA upstream 219118 32707093 ~ 32707498 (+) True G74655
XR_004577916.1 lncRNA upstream 236593 32689426 ~ 32690023 (+) True LOC117596965
TU88509 lncRNA downstream 96962 33023976 ~ 33024331 (+) True G74686
TU88574 lncRNA downstream 198654 33125668 ~ 33125884 (+) True G74747
TU88585 lncRNA downstream 203029 33130043 ~ 33135759 (+) True mmp14b
TU88580 lncRNA downstream 221523 33148537 ~ 33149053 (+) True G74750
XM_034303860.1 mRNA upstream 606709 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 821325 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 207341 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 210037 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 247460 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 247460 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 247460 33174474 ~ 33249659 (+) False chd8
LOC117596944 other upstream 45251 32880711 ~ 32881365 (+) True LOC117596944
LOC117597138 other upstream 178823 32745500 ~ 32747793 (+) True LOC117597138
LOC117596925 other upstream 183479 32742471 ~ 32743137 (+) False LOC117596925
TU88484 other upstream 183646 32742265 ~ 32742970 (+) True LOC117596925
LOC117597137 other upstream 190345 32721824 ~ 32736271 (+) True LOC117597137

Expression Profile