RNA id: XR_004577928.1


Basic Information

Item Value
RNA id XR_004577928.1
length 1011
lncRNA type intronic
GC content 0.43
exon number 7
gene id LOC113540371
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11020133 ~ 11022796 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGAAGCATGGCCTTCCTTTTATGCTACCTGCAATGCTGAAGAGTCCAgattgagaaatgtgtgtgtttcaggctcaATCAGTGTTGAATGCGTTTTTTAACATGCTACCCCTAGAAGGActcttttataacatttttaacatgtattCTAGAAGGACTCTTTTATACTAGTAGTTTTACTACTGGTATGCTCATTGTGTGAATACGGGAAGCATTGTGTGAATGCTAAGATTGCTACTTCACACCCTATTGTGGACTCCTTGGGATTATACACTCAAGTCAGGAACGTTTGCCTGGAAGCACGTGGTGGATGGTGGTTGATGGTGGTTCGTTTGGACAACATGtgtatcttcatcatcatcatcttcgtCATCATCTTCAACAGCATCGTCGTCAATCAACGACAAGTACAATAATCATCCATCAAAAGACATCCGGGTCTCACATTGGACACCGTGCAGCCAACAGAAAGAAGGCAGAGGCTCGCAAAACTGGAGGGGGGACCTGCACCACCCCCACTCACAAATACAGAGGAAATGGCCTTGAGCCTGAACACTGGAAGGCCAGTGGCAGCGGGAATTCCAGGAGGGAGTTCATCAGAGCCAGTCACTCCCCAGGATACAAGTGCCTTCATAAAATATTCTGATGGTAATATCTGCCTTTTGGAGCCTCCTGTCATAACAGAACCCTAGGCAGTTgaagatgaggatgatgaaacCACTTCTGCCACAGAGAGGCCTACAGAGAGTGTGGAAGAACAGCACGAGGAGGGTCCACCAAATTCTGCTGCACAGATGAACACATTACCAGTTAAGGAGTTATATAGACTTCATCTTATTCAAAAAAtcgaaaaaaacagcaaagaaatTATACTTGGACCGCCAGATCCAAAAAGGCAGCTCTGGAAATCGACATCCTGAAAGAAAAGCTAAAGGTGAGAGTATGGTCACAGGTGAATTGTATGAATTATTGgaaaaatttgaaaatctaaCAGTTGCTTTTGTATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73963 lncRNA upstream 109991 10907025 ~ 10910142 (+) True G62416
TU73906 lncRNA upstream 155272 10864655 ~ 10864861 (+) True G62373
XR_004577939.1 lncRNA upstream 203581 10815750 ~ 10816552 (+) True LOC117596985
TU73717 lncRNA upstream 356726 10657852 ~ 10663407 (+) False c4h4orf48
XR_004577940.1 lncRNA upstream 513656 10499275 ~ 10506477 (+) True LOC117596986
TU74139 lncRNA downstream 154233 11177029 ~ 11193851 (+) True G62549
XR_004577937.1 lncRNA downstream 159974 11182770 ~ 11183734 (+) True LOC117596983
TU74145 lncRNA downstream 192359 11215155 ~ 11215743 (+) True G62554
TU74174 lncRNA downstream 252643 11275439 ~ 11366783 (+) True G62572
TU74196 lncRNA downstream 297301 11320097 ~ 11360515 (+) True G62585
XM_026936774.2 mRNA upstream 4800 10998592 ~ 11015333 (+) False LOC113540335
XM_034303252.1 mRNA upstream 31567 10964062 ~ 10988566 (+) True LOC117596976
XM_034303248.1 mRNA upstream 57574 10944179 ~ 10962559 (+) True LOC117596975
XM_034303255.1 mRNA upstream 80662 10918503 ~ 10939471 (+) True LOC113539892
XM_034303256.1 mRNA upstream 80662 10918503 ~ 10939471 (+) False LOC113539892
XM_034303254.1 mRNA downstream 68185 11090981 ~ 11111094 (+) True LOC113539896
XM_034303253.1 mRNA downstream 68185 11090981 ~ 11111094 (+) False LOC113539896
XM_026936763.2 mRNA downstream 107379 11130175 ~ 11137426 (+) True LOC113540324
XM_026936767.2 mRNA downstream 137125 11159921 ~ 11171340 (+) True mmp14a
XM_026936755.2 mRNA downstream 160939 11183735 ~ 11191994 (+) True ajuba
TU73719 other upstream 356726 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 454409 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 488605 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 489089 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 524663 10495398 ~ 10495470 (+) True trnak-cuu_19
XR_003403980.2 other downstream 622106 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 1269718 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 2395581 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 2447973 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 2535827 13558623 ~ 13562266 (+) True cited1

Expression Profile