RNA id: XR_004577935.1


Basic Information

Item Value
RNA id XR_004577935.1
length 1428
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC117596982
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11460070 ~ 11463038 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACAGCAGGCTACGGAAGCCTTAATAGTCCATATGTCATTAGTGTTCGAATTGAAGCAGCCGATTGGTCTGCACATCGCCGCTTCAAGACAAACAAACGCTTCGCAAGACAGACGTGGttaatttatgaatgaaagTGTGAAACTTCTGTCGCAATACGATGTTGTTACGTATCCTCACGCTTTTTAAAACAGGATGAGATTGGGATGAGCTGTATCAGGATCGAGAGTCACGTccactgagagaaacacacagtgtgtgatatGAGTATGCAggaaaaaaataaaaagagtcaCAGAACAGGAGAGAAAAACATTTGAGGAAAAATTTGATCCTGATGGACAAAATCAGTGATGCAGGCGCGCGCTCCCGAGAGGGGGAAGCATTTAATGACAGGAGATGCAAAATGGTACAACACGCTAAGTAAGTTTTAGCTTTTGAGAACATGTGACTCTAAAGTCAATGATAGAGacactgcatgtttttaaaattattttctaactGCATGATAATAAAACTCTGACTTTTTTCCTAGCAGGAAAACAGCATTTACCTTTGATAGGTAAAGTGTTTTATACttgtaacgaatccggcctctgtggttccccctgatcgtcaccagaggtcaccatcacccgagtattgacttCTCCCTCTAAACTCCACATCACCCCTTGCGTagcactgattacgagctcacctgcagctcgTTACCGGGATTACTTAAGCCTCAGCCTCACACTCATTCTCtgcgaagtcttgttttgccctgGCTGACATTTCTGGGTGTTATCACCTTTGTTATTGGATTACTGTGTTTGACCCTGGACTGTTCTCTGTCGTTTCGTGTTTGTTTGCTGCCTTCCCCGACCATTCGCCTGTCTTATTACTCTGCCTTTTGTCtcgcctctgattaccctgtttgcTGTTGCTCGACCACGCGTGTACAACTGTGTCTTCCTTTTATTAAAAGCTGCAGATGGATCCCCACTCCGGTTACTCGTCATTATAATACTCATACTTATAAGTGAAATGTAAGAAGAAGATCAGTCTTTCTAAAGTAGAAAAGGGTTTAAGGGCTTTAGTGCATGGCAGTAATAGGGAGCTATAGTGAGGAGGATAATGAGAGACACTTTAAGACTTCCTTTTAGCTGGAGAGATCTACAGATGAAAATAAGTCTgatgatgcagtggtgtaatgctgatatgtacattttaatatgaGAGGAAATCAGAAACCTCACTGTACCTGCATACTGCTGAATCCTCTTCAGTTCTCTGGAAACTAATTACAACAAAACATCACTTTCATTAGATTTCAGATAATTCTATTGTAATACtcactgaaataatttttttaaaaaactaacaTATAGTAAATGTACATATGTCTAGAAAAGTGAAATAAGAAAGTTTCTCACCTGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74413 lncRNA downstream 57049 11402269 ~ 11403021 (-) False si:dkey-183c6.7
TU74374 lncRNA downstream 93889 11365255 ~ 11366181 (-) True G62735
TU74393 lncRNA downstream 98641 11321370 ~ 11361429 (-) True G62754
XR_004577938.1 lncRNA downstream 101516 11350697 ~ 11358554 (-) True LOC117596984
TU74382 lncRNA downstream 114111 11312414 ~ 11345959 (-) True G62743
TU74459 lncRNA upstream 94546 11557584 ~ 11607947 (-) False G62813
TU74472 lncRNA upstream 107947 11570985 ~ 11605575 (-) True G62823
TU74456 lncRNA upstream 118533 11581571 ~ 11607947 (-) False G62813
TU74457 lncRNA upstream 136105 11599143 ~ 11607947 (-) True G62813
TU74482 lncRNA upstream 146510 11609548 ~ 11609774 (-) True G62830
XM_026936779.2 mRNA downstream 27818 11426298 ~ 11432252 (-) False syt4
XM_026936778.2 mRNA downstream 27818 11426298 ~ 11432252 (-) True syt4
XM_026936784.2 mRNA downstream 44173 11402027 ~ 11415897 (-) True si:dkey-183c6.7
XM_034303276.1 mRNA downstream 78151 11377829 ~ 11381919 (-) True ccdc166
XM_026933044.2 mRNA downstream 112482 11342706 ~ 11347588 (-) True LOC113538167
XM_034303241.1 mRNA upstream 46693 11509731 ~ 11519651 (-) False LOC113540344
XM_034303239.1 mRNA upstream 46693 11509731 ~ 11518925 (-) True LOC113540344
XM_034303240.1 mRNA upstream 46693 11509731 ~ 11518654 (-) False LOC113540344
XM_034303833.1 mRNA upstream 61788 11524826 ~ 11535243 (-) True LOC117597110
XM_026937343.2 mRNA upstream 159847 11622885 ~ 11626845 (-) True rab39bb
XR_003404120.1 other downstream 245648 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 247136 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 251237 11208733 ~ 11208833 (-) True LOC113540753
TU74341 other downstream 277757 11177711 ~ 11182313 (-) False mrpl52
TU73964 other downstream 550071 10907127 ~ 10909999 (-) False nedd8
TU74378 other upstream 70726 11533764 ~ 11535013 (-) False LOC117597110
TU74889 other upstream 784236 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74900 other upstream 809180 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other upstream 809334 12272372 ~ 12277612 (-) False LOC113539775
TU74901 other upstream 809334 12272372 ~ 12277669 (-) False LOC113539775

Expression Profile