RNA id: XR_004577937.1


Basic Information

Item Value
RNA id XR_004577937.1
length 777
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id LOC117596983
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11182770 ~ 11183734 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTCGCATTCTTGCTGTGTATCTAGCCGTGCAGTGCTGACTGAAAcatcccctgtgtgtgtgtgtgtgtgtgttctctccaACAAGTCCCCACTCGCTGATAACGCGCCCAGCGAGGGAGAggcacaccgacacacacacacacacacacacacacacttctgctagCCGGAGGAaaaaagcatacacacacaaggcaTGAAGAAGGGGCTTCGGGGTAgggaaaatgtcttttttttttaaacaccactGTAGTTTCTGTTTGACGAGCTGAATAAAAGTGGCCGTGTGGTAACCGGTTTACTGCCATCGGAATTTATGCCACTGGTAACTATGGAGCAGAGACTGGCATttttagaaaacacacacacacacagttacattgTTACGAGCTCGcaaaagcgcacacacacacacacacacacacacacacacacaaacgaccGTATCACAACGCCGGGCACTCGGCGATATCCCTCCGCACATTCCACAGAGGAAAGGCACGATTAACTAGGCCTTAGGGTCGGAATAACAAGAAGAAGTAGACTAGAAACTAGTCTCATCTACTCACAGGTTACTCAAGATCTCTCACATATTCTCAGCGTCATGAAACTTTAGTTAACTCCACATTATACTTTAACTCCACGATATCTCCACAGGACTTCAGAATGTGAACGCAGGCGACATCAATCTGAGAAGTTTGGACGTGTGACGAAATTGTGGGATGCTGAAATCCATCCGCGCTGCCCAGAAGAAAGATGTTCCGGTCTGAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577928.1 lncRNA upstream 159974 11020133 ~ 11022796 (+) True LOC113540371
XR_004577929.1 lncRNA upstream 159974 11020139 ~ 11022796 (+) False LOC113540371
TU73963 lncRNA upstream 272628 10907025 ~ 10910142 (+) True G62416
TU73906 lncRNA upstream 317909 10864655 ~ 10864861 (+) True G62373
XR_004577939.1 lncRNA upstream 366218 10815750 ~ 10816552 (+) True LOC117596985
TU74145 lncRNA downstream 31421 11215155 ~ 11215743 (+) True G62554
TU74174 lncRNA downstream 91705 11275439 ~ 11366783 (+) True G62572
TU74196 lncRNA downstream 136363 11320097 ~ 11360515 (+) True G62585
TU74200 lncRNA downstream 138736 11322470 ~ 11325192 (+) False LOC117596981
XR_004577934.1 lncRNA downstream 138742 11322476 ~ 11325752 (+) True LOC117596981
XM_026936767.2 mRNA upstream 11430 11159921 ~ 11171340 (+) True mmp14a
XM_026936763.2 mRNA upstream 45344 11130175 ~ 11137426 (+) True LOC113540324
XM_034303254.1 mRNA upstream 71676 11090981 ~ 11111094 (+) True LOC113539896
XM_034303253.1 mRNA upstream 71676 11090981 ~ 11111094 (+) False LOC113539896
XM_026936774.2 mRNA upstream 167437 10998592 ~ 11015333 (+) False LOC113540335
XM_026936755.2 mRNA downstream 1 11183735 ~ 11191994 (+) True ajuba
XM_026936802.2 mRNA downstream 56940 11240674 ~ 11244577 (+) True dhrs4
XM_026936804.2 mRNA downstream 72204 11255938 ~ 11258662 (+) True cideb
XM_026936747.2 mRNA downstream 199700 11383434 ~ 11400606 (+) True si:dkey-183c6.8
XM_034303244.1 mRNA downstream 256354 11440088 ~ 11445185 (+) True LOC113539902
TU73719 other upstream 519363 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 617046 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 651242 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 651726 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 687300 10495398 ~ 10495470 (+) True trnak-cuu_19
XR_003403980.2 other downstream 461168 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 1108780 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 2234643 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 2287035 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 2374889 13558623 ~ 13562266 (+) True cited1

Expression Profile