RNA id: XR_004577942.1


Basic Information

Item Value
RNA id XR_004577942.1
length 539
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC117596988
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11463083 ~ 11464606 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGAGTTTGAAATCAAGTTATGCAAACCAGTAAAGGAGATATGAAACGAAAGCAGACTCAAATTACACTCTTCCAGTGCTTTCGTAAGCCTGTCCTTGAAGCTACTGCCGCTTCGTGTGACACTGCAGCTGCAGGAGAAACCAGTACTACAGAAAATGAGCCAGATGAGGCTGATGTTATCGAAACCTTACCTAATAAatgatgagagagatgagaactCCTGGCCAGCCTTGTGGACAGAAAGTCAGGCTAGGAAATTCAGAAACAGCTATCCTTGGTTAGAGTGGAGGGACAGAAAGTTAGGTTGTGCTGTTTGCAGTGTAACAAAATCAACTGGTATCCTCACAGAAAAAAGAGTGCCCATATCTGAGGAGTGGGTATACTTTAAGATCCAGGCCTCAAATGCAAACAGATCAACATCTCTGGCCTCTTTGAGGAACAAGATACGAAGACACGAGACATCCAGGGCACACGAAATAGCCCAGGAGCTCACTGAAAAGGGTGGACAGGATTTACTTGGAAATTTGATGAGAACTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74234 lncRNA upstream 25228 11437529 ~ 11437855 (+) True G62618
XR_003404022.2 lncRNA upstream 41905 11418007 ~ 11421178 (+) True LOC113540368
TU74174 lncRNA upstream 96300 11275439 ~ 11366783 (+) True G62572
TU74121 lncRNA downstream 126120 11590726 ~ 11605230 (+) False LOC117596972
TU74113 lncRNA downstream 137842 11602448 ~ 11605230 (+) False LOC117596972
TU74255 lncRNA downstream 144150 11608756 ~ 11609269 (+) True G62639
TU74256 lncRNA downstream 146230 11610836 ~ 11611057 (+) True G62640
TU74260 lncRNA downstream 190861 11655467 ~ 11705262 (+) False si:ch211-200p22.4
XM_034303260.1 mRNA upstream 336 11453930 ~ 11462747 (+) True LOC117596977
XM_034303244.1 mRNA upstream 17898 11440088 ~ 11445185 (+) True LOC113539902
XM_026936747.2 mRNA upstream 62477 11383434 ~ 11400606 (+) True si:dkey-183c6.8
XM_026936804.2 mRNA upstream 204421 11255938 ~ 11258662 (+) True cideb
XM_026936802.2 mRNA upstream 218506 11240674 ~ 11244577 (+) True dhrs4
XM_034303231.1 mRNA downstream 3344 11467950 ~ 11582422 (+) False LOC117596971
XM_034303232.1 mRNA downstream 84994 11549600 ~ 11582422 (+) False LOC117596971
XM_034303233.1 mRNA downstream 85045 11549651 ~ 11582422 (+) False LOC117596971
XM_034303229.1 mRNA downstream 105522 11570128 ~ 11582422 (+) True LOC117596971
XM_034303230.1 mRNA downstream 105522 11570128 ~ 11582422 (+) False LOC117596971
TU73719 other upstream 799676 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 897359 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 931555 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 932039 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 967613 10495398 ~ 10495470 (+) True trnak-cuu_19
XR_003403980.2 other downstream 180296 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 827908 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 1953771 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 2006163 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 2094017 13558623 ~ 13562266 (+) True cited1

Expression Profile