RNA id: XR_004577946.1



Basic Information


Item Value
RNA id XR_004577946.1
length 294
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC117596991
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12922870 ~ 12926987 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CTTTTCAGGCACAGAGGAACAGATGGGGGGAGACAAGGTGGGAGACACACCTGTTTTTGTctacagagagaatgagagacagaatggaagagagagaaaggGAGTGATTCAAAGCCAAAAATGTGTGCAAACACTCTCACCTCCAACCCTCGATGAAAATGAACTCCAATAATAAACTCCGTTCTCTGCCTGACAAGCACATGATGGTACTTCTGTGATCCATCCTGATTTcccacttctgcttggagctttcatcacctgaaaatcacctgatgctgctgaggatggccccac

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU75285 lncRNA upstream 88540 12801894 ~ 12834330 (+) True G63547
XR_003404040.2 lncRNA upstream 150048 12768585 ~ 12772822 (+) True LOC113540557
TU75255 lncRNA upstream 150067 12770726 ~ 12772803 (+) False LOC113540557
TU74949 lncRNA upstream 564622 12357832 ~ 12358248 (+) True G63242
TU74948 lncRNA upstream 565189 12355550 ~ 12357681 (+) True G63241
TU75450 lncRNA downstream 192481 13119468 ~ 13119677 (+) True G63685
TU75461 lncRNA downstream 208672 13135659 ~ 13135860 (+) True G63696
TU75429 lncRNA downstream 272020 13199007 ~ 13199862 (+) True G63666
TU75479 lncRNA downstream 286990 13213977 ~ 13219859 (+) False tmem88b
TU75440 lncRNA downstream 331887 13258874 ~ 13266479 (+) True LOC117597082
XM_026936981.2 mRNA upstream 61653 12795941 ~ 12861217 (+) True efnb3b
XM_026937280.2 mRNA upstream 134645 12777177 ~ 12788225 (+) True wrap53
XM_026937160.2 mRNA upstream 154966 12742257 ~ 12767904 (+) True gigyf1a
XM_026936009.2 mRNA upstream 189392 12718253 ~ 12733478 (+) False epoa
XM_026935904.2 mRNA downstream 24082 12951069 ~ 12976437 (+) True serpinh2
XM_026936299.2 mRNA downstream 53862 12980849 ~ 13115167 (+) True dnah2
XM_034303612.1 mRNA downstream 189229 13116216 ~ 13198549 (+) True kdm6ba
XM_034303611.1 mRNA downstream 189229 13116216 ~ 13198549 (+) False kdm6ba
XM_034303610.1 mRNA downstream 230461 13157448 ~ 13198549 (+) False kdm6ba
TU74787 other upstream 627747 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1225575 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2259463 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2357146 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2391342 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 491390 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 543782 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 631636 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 778589 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 1328757 14255744 ~ 14269340 (+) False brms1

Expression Profile


XR_004577946.1 Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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XR_004577946.1 Expression in each Bioproject

Bar chart with 3 bars.
XR_004577946.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.