Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577958.1 |
| length | 755 |
| lncRNA type | inter_gene |
| GC content | 0.51 |
| exon number | 3 |
| gene id | LOC117596998 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 6277605 ~ 6295446 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU71260 | lncRNA | upstream | 69291 | 6208102 ~ 6208314 (+) | True | G60232 |
| TU71239 | lncRNA | upstream | 133803 | 6143532 ~ 6143802 (+) | True | trnat-ugu_2 |
| TU71024 | lncRNA | upstream | 378615 | 5897899 ~ 5898990 (+) | True | G60036 |
| TU71021 | lncRNA | upstream | 423717 | 5853669 ~ 5853888 (+) | True | G60033 |
| TU71017 | lncRNA | upstream | 434531 | 5842775 ~ 5843074 (+) | True | G60029 |
| TU71302 | lncRNA | downstream | 545 | 6295991 ~ 6296234 (+) | True | G60267 |
| XR_004577957.1 | lncRNA | downstream | 5879 | 6301325 ~ 6305562 (+) | False | LOC117596997 |
| XR_004577956.1 | lncRNA | downstream | 5879 | 6301325 ~ 6304890 (+) | True | LOC117596997 |
| TU71349 | lncRNA | downstream | 84799 | 6380245 ~ 6380462 (+) | True | G60312 |
| TU71400 | lncRNA | downstream | 118354 | 6413800 ~ 6414013 (+) | True | G60362 |
| XM_026947472.2 | mRNA | upstream | 72715 | 6202522 ~ 6204890 (+) | True | foxc1a |
| XM_026947454.2 | mRNA | upstream | 100446 | 6171029 ~ 6177159 (+) | True | foxf2a |
| XM_026947455.2 | mRNA | upstream | 113765 | 6162153 ~ 6163840 (+) | True | foxq1a |
| XM_026947555.2 | mRNA | upstream | 240373 | 6014920 ~ 6037232 (+) | True | irf4a |
| XM_026947473.2 | mRNA | upstream | 267821 | 5991928 ~ 6009784 (+) | True | dusp22b |
| XM_034303942.1 | mRNA | downstream | 255539 | 6550985 ~ 6572077 (+) | False | wrnip1 |
| XM_034303941.1 | mRNA | downstream | 255540 | 6550986 ~ 6570557 (+) | True | wrnip1 |
| XM_026947544.2 | mRNA | downstream | 276622 | 6572068 ~ 6576902 (+) | True | LOC113547283 |
| XM_034303652.1 | mRNA | downstream | 284909 | 6580355 ~ 6602411 (+) | True | dhx30 |
| XM_026947481.2 | mRNA | downstream | 349082 | 6644528 ~ 6647156 (+) | False | LOC113547232 |
| trnat-ugu_2 | other | upstream | 133968 | 6143565 ~ 6143637 (+) | False | trnat-ugu_2 |
| trnat-ugu_1 | other | upstream | 138233 | 6139300 ~ 6139372 (+) | True | trnat-ugu_1 |
| TU70896 | other | upstream | 681479 | 5580144 ~ 5596126 (+) | False | LOC113547291 |
| XR_004578077.1 | other | upstream | 1089559 | 5179562 ~ 5188046 (+) | False | LOC113547261 |
| TU70397 | other | upstream | 1269472 | 4974195 ~ 5008133 (+) | True | G59492 |
| trnar-ucu_1 | other | downstream | 135040 | 6430486 ~ 6430577 (+) | True | trnar-ucu_1 |
| XR_004578001.1 | other | downstream | 299680 | 6595126 ~ 6596561 (+) | False | LOC117597080 |
| XR_003402765.2 | other | downstream | 1760610 | 8056056 ~ 8062839 (+) | False | LOC113526345 |
| XR_004578049.1 | other | downstream | 2399906 | 8695352 ~ 8724440 (+) | True | LOC117597156 |
| TU72678 | other | downstream | 2599024 | 8894470 ~ 8896729 (+) | True | G61359 |
