Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577967.1 |
| length | 738 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 4 |
| gene id | LOC117597022 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 696118 ~ 699232 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU68359 | lncRNA | downstream | 3850 | 640677 ~ 692268 (-) | True | G57823 |
| TU68275 | lncRNA | downstream | 21630 | 600626 ~ 674488 (-) | True | G57761 |
| TU68377 | lncRNA | downstream | 22395 | 672869 ~ 673723 (-) | True | G57837 |
| TU68376 | lncRNA | downstream | 23321 | 672019 ~ 672797 (-) | True | G57836 |
| TU68369 | lncRNA | downstream | 64810 | 618285 ~ 631308 (-) | False | G57831 |
| TU68224 | lncRNA | upstream | 10451 | 709683 ~ 761025 (-) | False | G57733 |
| TU68381 | lncRNA | upstream | 35689 | 734921 ~ 738411 (-) | True | LOC117597026 |
| XR_004577973.1 | lncRNA | upstream | 38937 | 738169 ~ 740709 (-) | False | LOC117597026 |
| TU68382 | lncRNA | upstream | 40787 | 740019 ~ 740760 (-) | False | LOC117597026 |
| TU68383 | lncRNA | upstream | 40787 | 740019 ~ 748267 (-) | False | LOC117597026 |
| XM_034303482.1 | mRNA | downstream | 198555 | 347059 ~ 497563 (-) | False | LOC117597012 |
| XM_034303484.1 | mRNA | downstream | 199314 | 347059 ~ 496804 (-) | True | LOC117597012 |
| XM_034303497.1 | mRNA | downstream | 244425 | 387311 ~ 451693 (-) | False | LOC117597013 |
| XM_034303491.1 | mRNA | downstream | 244427 | 395440 ~ 451691 (-) | False | LOC117597013 |
| XM_034303496.1 | mRNA | downstream | 247547 | 395440 ~ 448571 (-) | False | LOC117597013 |
| XM_034303503.1 | mRNA | upstream | 817 | 700049 ~ 704378 (-) | True | LOC117597018 |
| XM_034303500.1 | mRNA | upstream | 11127 | 710359 ~ 719607 (-) | True | LOC117597015 |
| XM_034303499.1 | mRNA | upstream | 11133 | 710365 ~ 719607 (-) | False | LOC117597015 |
| XM_034303498.1 | mRNA | upstream | 148841 | 848073 ~ 857200 (-) | True | LOC117597014 |
| XM_034303472.1 | mRNA | upstream | 164146 | 863378 ~ 886395 (-) | False | dis3l2 |
| TU68368 | other | downstream | 81875 | 612243 ~ 614243 (-) | True | G57830 |
| TU68328 | other | downstream | 199266 | 448725 ~ 496852 (-) | False | LOC117597012 |
| TU68285 | other | downstream | 397662 | 290510 ~ 298456 (-) | False | eif2b5 |
| TU67777 | other | downstream | 598001 | 95428 ~ 98117 (-) | False | LOC117596995 |
| TU68254 | other | upstream | 34323 | 733555 ~ 734771 (-) | True | G57740 |
| TU68216 | other | upstream | 140200 | 839432 ~ 856952 (-) | False | G57733 |
| TU68413 | other | upstream | 342545 | 1041777 ~ 1048841 (-) | False | G57868 |
| TU68836 | other | upstream | 993094 | 1692326 ~ 1692997 (-) | True | G58190 |
| trnav-cac_1 | other | upstream | 1300746 | 1999978 ~ 2000050 (-) | True | trnav-cac_1 |
