RNA id: XR_004577979.1


Basic Information

Item Value
RNA id XR_004577979.1
length 1534
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id LOC117597030
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 498209 ~ 510003 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtatgtttttattttgggaaataatttTTGCTGGGGCTTTTTACTAGGAACATCagacaatatttaaaacatttatcctttaatgtaatgttatacTTTACTCTGTCTTTATTCAAATGTAGATTAAGTCTGCAGCTGCTTCATTATTGCATCTGTAAAAGAAGCAGAATTTGTCCTGCAGGATTCCAGTGGGTTTCTGTTCTTAGAGGTTCAGCAGCAGGTTCGTGTTCAGCAGATGTTTGTTTTGTCTCCTTTGCTCTGAAGtttgaagaaaacacaaagagaagggaaaaaaggacATTACTCCATTGTCACCTGAAGAACAGGAGCAAGAGACACAGTACAGCACTGATACTTTCCAAGCAGCACCGCCGGTGTCCTGCACATCATTCCAGATAGATCCTGTGATTGGACAACCGACCGGTCGATCTTCCCTGTCAACGTGATGACGACACCCATCTCTGAACCAATCAGGCACCCCCAGTCTACTATAAGGACTCGGAAATGACGTAAGACGGGAGAGTGTGTTTCTCCTTTGCTGATAGTTCTCGCTTGTTTGTCACGCTGTCCATCCTTTTCGAGTTTCTGGTGCAATTATGATTTGTTAGTTTATCTTGAGTTATTTCTGATCGCTCCCTTTACTCTACATGTTGTATTTACTCGCCTCTGATTTGACTCTGGCTGTTTGCCCGATTGTGCTGTGATCTgattccctttctctctttaagaGTTGATGGTTGGATTTATCTCTTGACTCATAGTGTTGAGATGAGGTTAGTATGTCACGTGACCTACACAAAGCAACATGTAGAATATCGCTTGTATAAAAACACTAGGATAGGAGCGGGAGCTAATGcttgtatttatgttttgttagtGAGAGTAGTTAGTTGGCGTTTACGCtgaagatttgttttgttttctttttctttgtttagatTAGCGTTGAATTGGTTGGAGTTAgtaagtgttttgttttattaatttctttgctTTCAGCTCCGCTCATGTCTCACACTGTTGAGGTTTTTTAAAGTATATAACTTGTAAATATCATCTCCCTTACTCTTTGACGTTTCTGTCGtcactgtaaatatgaaaagCAATCGAGTGTTTTGATGGACATAATTCCTCACTAAAGTTTTTCTGATAAGCATTTTCGGTTTCTGTTTGATTCATTACTCCACACATCTCATTCCTTTAGTAACAGACAGCCTCCCCGATtctaaaaacatctttaatttctttttcattaatttattctttgtGTTGACTTCCTACATCCCTGGACGCTAATTTTGACAACAGCAGCAGCCCAATAGGAAGTCGTAGCATACATGCTCATGTCAAGTAACTTTAgcagttttacacacactcagtactgtttgactttatagtatgcAGCTGTGGATGAGCAGTGAGGAGGTGTTTCCtctcagtctggttcctctcaaggtttcttcctcatgtcatttcAGAGAGTCTTttcttgccaccattgcctctgactttctcattagggatctaaatctat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68305 lncRNA downstream 1108 374455 ~ 497101 (-) True G57788
XR_004577966.1 lncRNA downstream 16134 481275 ~ 482075 (-) True LOC117597021
TU68325 lncRNA downstream 18925 440278 ~ 479284 (-) True G57800
TU68316 lncRNA downstream 23951 389331 ~ 474258 (-) False G57794
TU68336 lncRNA downstream 26585 470849 ~ 471624 (-) True G57808
TU68217 lncRNA upstream 11983 521986 ~ 699337 (-) False G57733
TU68230 lncRNA upstream 11983 521986 ~ 538098 (-) False G57733
XR_004577965.1 lncRNA upstream 25862 535865 ~ 537721 (-) True LOC117597020
TU68346 lncRNA upstream 34160 544163 ~ 826584 (-) True G57816
TU68269 lncRNA upstream 42096 552099 ~ 595196 (-) True G57755
XM_034303482.1 mRNA downstream 646 347059 ~ 497563 (-) False LOC117597012
XM_034303484.1 mRNA downstream 1405 347059 ~ 496804 (-) True LOC117597012
XM_034303497.1 mRNA downstream 46516 387311 ~ 451693 (-) False LOC117597013
XM_034303491.1 mRNA downstream 46518 395440 ~ 451691 (-) False LOC117597013
XM_034303496.1 mRNA downstream 49638 395440 ~ 448571 (-) False LOC117597013
XM_034303503.1 mRNA upstream 190046 700049 ~ 704378 (-) True LOC117597018
XM_034303500.1 mRNA upstream 200356 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 200362 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 338070 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 353375 863378 ~ 886395 (-) False dis3l2
TU68328 other downstream 1357 448725 ~ 496852 (-) False LOC117597012
TU68285 other downstream 199753 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 400092 95428 ~ 98117 (-) False LOC117596995
TU68368 other upstream 102240 612243 ~ 614243 (-) True G57830
TU68378 other upstream 173485 683488 ~ 746031 (-) True G57838
TU68254 other upstream 223552 733555 ~ 734771 (-) True G57740
TU68216 other upstream 329429 839432 ~ 856952 (-) False G57733
TU68413 other upstream 531774 1041777 ~ 1048841 (-) False G57868

Expression Profile