RNA id: XR_004577980.1


Basic Information

Item Value
RNA id XR_004577980.1
length 1500
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC117597031
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31859960 ~ 31863157 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatactgtatgtttatgtattttgtttaaatgtattatCATGTTTGGGTGACTGACAGACATTCGGTAAAGCAAGATATAGATCTTTAAAGCATGTGTGCTTTCATCTTGGTGTCATTTTAAAAGTAGGTAAGTGGGGTGAGATACGCTGATGGTTTTGCCacagtgaattattttcctacgGAAGTGGGCGCGCACAGAATAAGAAATGACTGCTGACTTCCTGCCTACGTCAGAAGCGTCTGTGGTTGTTTTTCTCTGCTGAGAGGTAAACAaggcaggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgacagaAATGAGGACAGGAAAACTGATGCATGCGCCTTTTGCATGACATCTTGCATAAAGGTTGCACATGCAAAATCTGGTGCTAATTATGCACCATGCCTGCACCAtgacagctttatcctggtcagggttgcagttgTGGATCCAGAATACAGGAATACATCTTGAATTGGATTCCTGTTCAtcacagaagaaaataaaaatgtgtttttatgtattttactCGTGCTCATTACTGTTACTCTGGCTATGTTAATCTTGCTAATACTCTTTACTGTTCATCTTGCTATGCCTTTGCGAGCATCATGGGCACGGATCAATAAGGAAGACGATTGCATTGCAAAAATTGCATACCCCATGGTTATGGACATTCATAACAATGTTCATTAACTGTCATTAAAGGTTATATATAATGTCTATATGCAGTAAGCTTGTTTTTGCAATACTTATCCACCAGGGGGTTTGAGGCGAATCATTTTTTGAGTCAAAAATTAAGTGCATGTTGCCATCTATTGTCAATCCTCCAAACTGTGCTTTACCAGAATTTTCCTCTTCATAATAGAGCCTGGAAGGCAGAATTATCCAGTTTGGTTTGCACTTATTTCAAATTCTGCTTGCAaattaaaaatctgatttttatttcctgtaacGATTACGATTTATTTCCTGTAACTGTTACGATTTTGTTACAGGGACTTTTTCCTTTTTCGTAACAATTCAACTGAAATCCAATttcatgaagaaaaaataatgtCTTTATTTCCTGTGCTTGTGTTTGCATTACATCTCCATCAGAGGGCTTGAGGGCTTGAGGAGCAgtgtttcaaaataataaaCTTGGTTGAACTTTCTGAGAAGAACTTTACACTCAGCTCACATACCTAAAGCATGTCATGTGCATCATGTGCTTATTCCGAAAGCACTAGTACCcagtatatttaattaaaatcatcATAATCTGAAGTCAATTAACAAACTGCTCTCCAGGTAACGAACTCTAAGcagctaaatcatttacagTCCAAACAGAACTTCAggatggatttaaaaaatgtgacaaatgtGACAAACATGTGCAGTTTTGACAGAAGACAACAAAGTGTGTGAAGAAGAAGGGACATGGACAGAAGTACAGTTATAGCAATTGAAATTTGGTCTACTGTAATTGAccatatccttttt

Function

GO: NA

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88158 lncRNA upstream 12094 31784640 ~ 31847866 (+) False LOC113540254
TU88163 lncRNA upstream 12094 31788732 ~ 31847866 (+) False LOC113540254
TU88168 lncRNA upstream 12094 31796806 ~ 31847866 (+) False LOC113540254
TU88148 lncRNA upstream 12094 31806726 ~ 31847866 (+) False LOC113540254
TU88141 lncRNA upstream 12094 31822525 ~ 31847866 (+) False LOC113540254
TU88389 lncRNA downstream 344204 32207361 ~ 32207824 (+) True G74573
TU88394 lncRNA downstream 421051 32284208 ~ 32296534 (+) True G74578
TU88396 lncRNA downstream 455275 32318432 ~ 32340074 (+) True G74580
XR_004577915.1 lncRNA downstream 669689 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 826269 32689426 ~ 32690023 (+) True LOC117596965
XM_034304128.1 mRNA upstream 83162 31759889 ~ 31776798 (+) False LOC113540067
XM_034304129.1 mRNA upstream 83162 31769827 ~ 31776798 (+) False LOC113540067
XM_034303620.1 mRNA upstream 106293 31732612 ~ 31753667 (+) True smg7
XM_034303622.1 mRNA upstream 106293 31732613 ~ 31753667 (+) False smg7
XM_034303858.1 mRNA upstream 153691 31690175 ~ 31706269 (+) True lamc2
XM_026936384.2 mRNA downstream 218762 32081919 ~ 32105291 (+) False LOC113540131
XM_026936385.2 mRNA downstream 218762 32081919 ~ 32105291 (+) False LOC113540131
XM_026936383.2 mRNA downstream 218762 32081919 ~ 32105291 (+) False LOC113540131
XM_034303207.1 mRNA downstream 218762 32081919 ~ 32105291 (+) False LOC113540131
XM_034303208.1 mRNA downstream 218762 32081919 ~ 32105291 (+) False LOC113540131
XR_004578111.1 other upstream 83162 31769822 ~ 31776798 (+) True LOC113540067
TU87898 other upstream 506816 31351261 ~ 31353144 (+) False c4h22orf39
TU87706 other upstream 762072 31061730 ~ 31097888 (+) False spsb4a
TU87615 other upstream 1092828 30746131 ~ 30767132 (+) True G73944
LOC117597174 other downstream 82891 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 95865 31959022 ~ 31959667 (+) True LOC117597173
TU88365 other downstream 95885 31959042 ~ 32330845 (+) False LOC117597173
LOC117597122 other downstream 97712 31960869 ~ 31965136 (+) True LOC117597122
LOC117596936 other downstream 104042 31967199 ~ 31967957 (+) True LOC117596936

Expression Profile