RNA id: XR_004577988.1


Basic Information

Item Value
RNA id XR_004577988.1
length 3045
lncRNA type inter_gene
GC content 0.43
exon number 6
gene id LOC117597038
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28892016 ~ 28896799 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atggtagggtcacaATTTGGCAccagcagcatgaatccatggacgcAACCTGccttcaacagtccaggctggtggaggtggtgtaatggtgtgtggaATGTTTTCTTGCCACACTTTgagcccgttaataccaatccatcatcgcttgaatgccacagcctatttgagtattgttgctgaccatgtgcatcccttcatggccacaatttaccattttCTAATGGCTTATTATTCCAgtatgataatgcaccatgtcacaaagcaaaagtcgtctcaaactggtttcatgaacatgacagcgACTTCAGTGTTCTTCTCCAGTGGCCTTCCTAGCCACCGGGTCTGAATCCAATAGACTTACTGGATTGAAAGTGCACCAGAAAAATCTGTGCGATCAtctcaacatggaccagaatctcaaaggaacatctccaaaatcttgtggaatccatgctatgaagaattgaggctgtttggAGAGCAAAGGGACTGAGAGCCCTACccagtgttagtgtagtgttcctaataaagttctCACTGAGTGTACACCATAAGGGAACAGCTGTTGTGGCTCATGATGTCATCTGTATACTTTTGcatatgtaaatttataaatgataaaaccGCAGTGCTGACAGGAGTGCTGTAAGATCTGTCGGTCTGGAGATCAGCTAATTAACGTCTTCAGCTCCTCTTTTATTGGCAAATGTAAGCAAATCAGTGAGGCTGCGTAACCTCCCCTGATTTGCGATTGTGTTTaggaaagagaggagaagagaagtgTGTGGAAAGTTATTGTCAGGATTGTGAGTTCTGTGTGCAGGTATGCTGGATATGAGGGTCAGTCCAGTCAGAGCTACAGCCAGCCGGGTTACGGAGGATACGGCCCGGGTTCGGAGTCGGACAGCAGCCCGGACCTTACGGTCAGGGATACGGCTCCAGCTACAGCTCGGTTTTCGAACGTAGTTGTCGATGAGGTGACAGTGAGAGGGCGATGTCACAGGAAAATGTCCCTGAGGAAAAATGAGGAGGCTCATCACCTTCAGTACCGTGGGCTTCAGGACGGTGCCATTGCCTCTGTCATGCACCAGCTCACTGCAGACCTGGGACACAGgGAATTGCACCAGAGGCTATAAAGGACATGGCGGTGTGTAACCCAGTGGCAAAGACAAGGAATAGTGTCAGGACTGGTGTGAAGAGCACACTGTACAGAGCATGTGGTGGGCCTCTTCCAGTTCCTCACGTCATGGCCAGCGGGGAGAAACTGAAAGACGAACTTCCACAACTGGGGATATGCAAATTGCTGCACGGACATGAGTGCCTTGATTTGGTGGACTCTACATTTGGCCCTGTGCCTTTTGGGTCTGTGCTCGCTTACCAGTGCCTTCCTGAAATACATAGAGACATATGTAGAGACATTATTGAACACCCTGGTGACATTATTGAACACCCTGAGTTTCCTCAGTTGCCTGTTGACAGATACAGATTTAAATTTCCTATAGATTTTGAGGCCAGCTATAAGCAACAGTGCCACTTGGAGAGCCTAAAGGTGTCATGAAAGATCTCCGCTGCTATTGAGGCAGAAACCCGACTGCAGTCAAAATGCCAGCTGTGGACCCAGCTGTTCAATCTGAAACAGTCAATATATTCTACATAGAAACAAGTCCATATTTAAGAAAAGGCGGCTGGATAAAGGTATTATATTTATGAAGGATGTGTTGAAGGGTGACTTGTCTCGGCATAAGTACCAAGCGCATGAAGATCGGCCGCACCACACGCACCGAGGACAAGATCCTGTCCGTTGAGATCAAGCGCGGCTGGAAGGAGGGCACCAAGATCACGTTCCCACGGGAGGGCAACGAGGGTTAATAAAGGTTTACAGATGTTGAGCGTCAAGTTAATAGATGTTTGTTATGTCCAGATGTTGAgtgtaatgttaaatgtttacaGATGTTCAGGGTCATTGATAATAGATGATTACAGATGTTGAAAATCATGTTAAGAGATGTTCAGTGTTATGTTAATAGATGTTTACAGATGTTGAGGATCAGGTTAGTGGATGTTTACAGATGTTGAGGGCGGATGATGTTAAAAGATGTTTATAGATGGCGTTTATAAATTTCAGGGTCTAATAGCAGATGTGTACAGATGTTCAGGGTCCTGTTAATGcgtgtttatctgtttatggaTGTTTAGGGTCATATTAACAGATGTTTTCAGATGTGGAGGATTGTATtaacacatatttacatatctGATTACAGATGTTGAGAGTTTAGGAATGTTTACAGATGACTTTTTTTAACATGACGTTGAGGGTCACGGTGTTAAATTTTTACAGATGTCCAGTGTCATGTTAACAGCTGTTGAGAGTCATATTTCTGCTTTCAGATGTTGAGGGTTGTATTAACAGATGTTTACCCATGTTGAAGTTTATGATTGCGTTTTTCAGCTGTTTACTGATCGGTTCAGATATTGAGGATTATGTTAGcagatgtttatgtatgtgtgcagATGTAAATTGATGTTTTGAGGTACAGTTAAAGTTGTTGAGTTGTTGATTATGTGCATTTAGAAATGTTAACAGATGTTTACAGAAGCTGAGGATAGTGACAGATCATCCTATTATGTTGAGAGTCGTTTAAACAGATATTTACAGATGTTGACAGTTTTGGTGAAAAGGCCAATTCTACACAGTAGGAGTCACCTCATTATCCTGCACCTCAGCACACAATAAATATCATCCTTCATCGatctacagtattaaatataatcacCGATATatagtaagtaaggaataaaacacttggggatgtgttctgacaggaaaataatcaacaacggggtggtgtgatgcggcctgacacaaagcagagttactgttacgactctgatgatgattattttcatataacagaaCATAAGATAGAAGTTTATTCATCccgagggaaattcttgtgctaGAGGTTGCTCAAACAGATATATCACAACAATGtaggaataaaagacaatatagtaataaatgaagtagTAAAAATAACCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86430 lncRNA downstream 58296 28832384 ~ 28833720 (-) True G72893
TU86322 lncRNA downstream 100187 28787623 ~ 28791829 (-) False LOC117597168
TU86345 lncRNA downstream 107876 28782923 ~ 28784140 (-) True G72824
XR_004577998.1 lncRNA downstream 174061 28713034 ~ 28717955 (-) True LOC117597077
TU86306 lncRNA downstream 223373 28667323 ~ 28668643 (-) True G72796
TU86785 lncRNA upstream 43863 28940662 ~ 29029187 (-) False LOC113540203
XR_003404005.2 lncRNA upstream 44250 28941049 ~ 29029191 (-) False LOC113540203
TU86813 lncRNA upstream 89673 28986472 ~ 28988383 (-) True G73243
XR_004577953.1 lncRNA upstream 116441 29013240 ~ 29029191 (-) False LOC113540203
XR_004577955.1 lncRNA upstream 118215 29015014 ~ 29029191 (-) True LOC113540203
XM_034303526.1 mRNA downstream 11814 28877573 ~ 28880202 (-) True LOC117597036
XM_034303527.1 mRNA downstream 15113 28873579 ~ 28876903 (-) False LOC117597037
XM_026936503.2 mRNA downstream 30573 28842922 ~ 28861443 (-) True gipc2
XM_026936493.2 mRNA downstream 64052 28798977 ~ 28827964 (-) False LOC113540190
XM_026936494.2 mRNA downstream 79712 28798977 ~ 28812304 (-) False LOC113540190
XM_034303523.1 mRNA upstream 14814 28911613 ~ 28918149 (-) False LOC113540041
XM_034303525.1 mRNA upstream 16880 28913679 ~ 28918152 (-) True LOC113540041
XM_026936498.2 mRNA upstream 158213 29055012 ~ 29077436 (-) True pigk
XM_026936482.2 mRNA upstream 234387 29131186 ~ 29147492 (-) False zzz3
XM_026936483.2 mRNA upstream 234387 29131186 ~ 29147359 (-) True zzz3
XR_004577982.1 other downstream 7051 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other downstream 7051 28882327 ~ 28884965 (-) False LOC117597037
XR_004577984.1 other downstream 9852 28873578 ~ 28882164 (-) True LOC117597037
XR_004578096.1 other downstream 239591 28648324 ~ 28652425 (-) False LOC113540437
trnas-uga_2 other downstream 655211 28236724 ~ 28236805 (-) True trnas-uga_2
TU86878 other upstream 251839 29148638 ~ 29152381 (-) False usp33
XR_003404076.1 other upstream 626595 29523394 ~ 29523466 (-) True LOC113540702
XR_003404072.2 other upstream 626924 29523723 ~ 29523912 (-) True LOC113540698
XR_003404071.2 other upstream 627710 29524509 ~ 29524687 (-) True LOC113540697
XR_003404077.1 other upstream 628190 29524989 ~ 29525061 (-) True LOC113540703

Expression Profile