Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577989.1 |
| length | 426 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 2 |
| gene id | LOC117597044 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 19821178 ~ 19824259 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU79755 | lncRNA | upstream | 54756 | 19764260 ~ 19766422 (+) | True | G67289 |
| TU79758 | lncRNA | upstream | 60548 | 19743640 ~ 19760630 (+) | True | G67291 |
| TU79757 | lncRNA | upstream | 70804 | 19743640 ~ 19750374 (+) | False | G67291 |
| TU79722 | lncRNA | upstream | 179559 | 19544046 ~ 19641619 (+) | True | G67262 |
| TU80083 | lncRNA | downstream | 55719 | 19879978 ~ 19881739 (+) | True | G67579 |
| TU80087 | lncRNA | downstream | 63919 | 19888178 ~ 19888725 (+) | True | G67582 |
| TU80110 | lncRNA | downstream | 87480 | 19911739 ~ 19914403 (+) | True | G67594 |
| TU80111 | lncRNA | downstream | 92341 | 19916600 ~ 19917169 (+) | True | G67595 |
| TU80167 | lncRNA | downstream | 138340 | 19962599 ~ 19965888 (+) | True | G67642 |
| XM_034303403.1 | mRNA | upstream | 126662 | 19651897 ~ 19694516 (+) | True | LOC113539894 |
| XM_026936525.2 | mRNA | upstream | 336032 | 19481055 ~ 19485146 (+) | True | LOC113540207 |
| XM_026936526.2 | mRNA | upstream | 336032 | 19481055 ~ 19485146 (+) | False | LOC113540207 |
| XM_026936523.2 | mRNA | upstream | 337068 | 19481055 ~ 19484110 (+) | False | LOC113540207 |
| XM_034303433.1 | mRNA | upstream | 350216 | 19455026 ~ 19470962 (+) | True | LOC113540575 |
| XM_026935817.2 | mRNA | downstream | 42892 | 19867151 ~ 19872149 (+) | True | LOC113539773 |
| XM_026936965.2 | mRNA | downstream | 57669 | 19881928 ~ 19886701 (+) | True | slx1b |
| XM_026937193.2 | mRNA | downstream | 119481 | 19943740 ~ 19953223 (+) | True | si:ch73-71d17.2 |
| XM_026937262.2 | mRNA | downstream | 147052 | 19971311 ~ 19983277 (+) | True | ntn4 |
| XM_026937321.2 | mRNA | downstream | 166425 | 19990684 ~ 20067220 (+) | True | dock11 |
| TU79253 | other | upstream | 962526 | 18856456 ~ 18858652 (+) | True | G66864 |
| TU78855 | other | upstream | 1612614 | 18197312 ~ 18208564 (+) | True | G66492 |
| XR_004577948.1 | other | upstream | 1690673 | 18113444 ~ 18130505 (+) | False | frem1a |
| XR_003403977.2 | other | upstream | 1810216 | 18000158 ~ 18010962 (+) | False | ctdnep1b |
| trnat-agu | other | upstream | 2056644 | 17764461 ~ 17764534 (+) | True | trnat-agu |
| trnah-gug_4 | other | downstream | 4052 | 19828311 ~ 19828382 (+) | True | trnah-gug_4 |
| trnah-gug_5 | other | downstream | 4560 | 19828819 ~ 19828890 (+) | True | trnah-gug_5 |
| trnar-ucu_2 | other | downstream | 276766 | 20101025 ~ 20101098 (+) | True | trnar-ucu_2 |
| TU80337 | other | downstream | 323536 | 20147795 ~ 20154771 (+) | False | fcer1g |
| trnaa-cgc | other | downstream | 528155 | 20352414 ~ 20352485 (+) | True | trnaa-cgc |
