Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577998.1 |
| length | 941 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 3 |
| gene id | LOC117597077 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 28713034 ~ 28717955 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU86306 | lncRNA | downstream | 44391 | 28667323 ~ 28668643 (-) | True | G72796 |
| TU86223 | lncRNA | downstream | 241263 | 28397661 ~ 28471771 (-) | True | G72726 |
| TU86202 | lncRNA | downstream | 329574 | 28343134 ~ 28383460 (-) | True | G72709 |
| TU86215 | lncRNA | downstream | 333902 | 28365657 ~ 28379132 (-) | True | G72720 |
| TU86171 | lncRNA | downstream | 513225 | 28197991 ~ 28199809 (-) | False | LOC117597043 |
| TU86345 | lncRNA | upstream | 64968 | 28782923 ~ 28784140 (-) | True | G72824 |
| TU86322 | lncRNA | upstream | 69668 | 28787623 ~ 28791829 (-) | False | LOC117597168 |
| TU86430 | lncRNA | upstream | 114429 | 28832384 ~ 28833720 (-) | True | G72893 |
| XR_004577988.1 | lncRNA | upstream | 174061 | 28892016 ~ 28896799 (-) | False | LOC117597038 |
| XR_004577986.1 | lncRNA | upstream | 174061 | 28892016 ~ 28896799 (-) | False | LOC117597038 |
| XM_026936341.2 | mRNA | downstream | 1326 | 28708029 ~ 28711708 (-) | True | prdx1 |
| XM_034303626.1 | mRNA | downstream | 1945 | 28708029 ~ 28711089 (-) | False | prdx1 |
| XM_026936878.2 | mRNA | downstream | 6511 | 28699669 ~ 28706523 (-) | True | zte38 |
| XM_026937185.2 | mRNA | downstream | 23022 | 28686556 ~ 28690012 (-) | True | uck2b |
| XM_026937186.2 | mRNA | downstream | 27458 | 28682472 ~ 28685576 (-) | True | czib |
| XM_034303624.1 | mRNA | upstream | 4895 | 28722850 ~ 28736753 (-) | True | si:ch73-182a11.2 |
| XM_034303625.1 | mRNA | upstream | 7865 | 28725820 ~ 28736753 (-) | False | si:ch73-182a11.2 |
| XM_034303988.1 | mRNA | upstream | 27675 | 28745630 ~ 28756644 (-) | True | LOC113540626 |
| XM_026936110.2 | mRNA | upstream | 44139 | 28762094 ~ 28763277 (-) | True | arl14 |
| XM_026936500.2 | mRNA | upstream | 45349 | 28763304 ~ 28785755 (-) | False | ppm1la |
| XR_004578096.1 | other | downstream | 60609 | 28648324 ~ 28652425 (-) | False | LOC113540437 |
| trnas-uga_2 | other | downstream | 476229 | 28236724 ~ 28236805 (-) | True | trnas-uga_2 |
| trnas-uga_1 | other | downstream | 476767 | 28236186 ~ 28236267 (-) | True | trnas-uga_1 |
| XR_003404039.2 | other | downstream | 671249 | 28016064 ~ 28041785 (-) | False | prkag2b |
| trnat-ugu_9 | other | downstream | 1088226 | 27624736 ~ 27624808 (-) | True | trnat-ugu_9 |
| XR_004577984.1 | other | upstream | 155623 | 28873578 ~ 28882164 (-) | True | LOC117597037 |
| XR_004577982.1 | other | upstream | 155625 | 28873580 ~ 28884965 (-) | False | LOC117597037 |
| XR_004577983.1 | other | upstream | 164372 | 28882327 ~ 28884965 (-) | False | LOC117597037 |
| TU86878 | other | upstream | 430683 | 29148638 ~ 29152381 (-) | False | usp33 |
| XR_003404076.1 | other | upstream | 805439 | 29523394 ~ 29523466 (-) | True | LOC113540702 |
