RNA id: XR_004578005.1


Basic Information

Item Value
RNA id XR_004578005.1
length 672
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id LOC113540631
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30128728 ~ 30138872 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTACTCGCCCTCCCTCTGCTGTGGGGAAAGGGGGGGCTTCTTAAAGGGGAACGCACACCGAAAATGACCTGACACACGCCACAACTTTTTCAACTCATTCCGTCATAATTGTTTGTTGGCCAAACAGGACAGTTTGATTGATTTTAAAAAGGAGCTTTGACATgttggcAGTGTATAATGGGCCTAAGAGGCAGAGGAACCAAGAAAGAAGCCCGAAAATTTCACATTGACGCCTATAATCCGGAGCTATCTCCCGATgagcaagggagagagagagagagagagagagatggaggaagagaggaCGAGGGAGATagtgagggatggagagagactTGACGAGACACTCCGAGAATAACACTTTACATTTTGTCGCCGTTTCCGAATCTCGGATCTCTGACTGTGCCACACAACCTCTACAGCCACCATTTTTCCTCTGGTTCTTTTTAATTGAATGTGGACCAGGCACCTCGGACGGAAAAagacacccttttttttttttctggagcaAGCGCTGTTGCATCCAATTACAGATAGGGAGAGGAGGGGGGCTAGCTAAAGCCCAGGAAGAGTTTATGACCCTTTCCACACATCTGGGATGAAAagcaggctgtttttttttttttttttcaagcttgaGGAGAGGCACAGGCATGTCTGCGAGAAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87279 lncRNA downstream 25858 30101440 ~ 30102870 (-) True G73656
TU87275 lncRNA downstream 30755 30095790 ~ 30097973 (-) True G73652
TU87230 lncRNA downstream 103692 29976671 ~ 30025036 (-) True G73618
TU87217 lncRNA downstream 199239 29929264 ~ 29929489 (-) True G73607
TU87081 lncRNA downstream 281837 29846674 ~ 29846891 (-) True G73492
TU87298 lncRNA upstream 48024 30186896 ~ 30191121 (-) True G73670
TU87313 lncRNA upstream 56807 30195679 ~ 30197576 (-) True G73684
TU87486 lncRNA upstream 338531 30477403 ~ 30478234 (-) False G73834
TU87487 lncRNA upstream 338531 30477403 ~ 30478234 (-) False G73834
TU87488 lncRNA upstream 338531 30477403 ~ 30478234 (-) False G73834
XM_034303327.1 mRNA downstream 43867 30064050 ~ 30084861 (-) True crlf1a
XM_034303448.1 mRNA downstream 72008 30050560 ~ 30056720 (-) True odf3l2a
XM_026937101.2 mRNA downstream 72320 30050560 ~ 30056408 (-) False odf3l2a
XM_026936237.2 mRNA downstream 85717 30037408 ~ 30043011 (-) False LOC113540054
XM_026936328.2 mRNA upstream 73517 30212389 ~ 30223320 (-) False acvr1l
XM_026936330.2 mRNA upstream 73517 30212389 ~ 30223163 (-) True acvr1l
XM_034303540.1 mRNA upstream 73517 30212389 ~ 30222759 (-) False acvr1l
XM_026936331.2 mRNA upstream 76791 30215663 ~ 30223320 (-) False acvr1l
XM_034303822.1 mRNA upstream 454834 30593706 ~ 30701045 (-) True epha4b
TU87233 other downstream 106203 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 397871 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 553001 29564602 ~ 29575727 (-) False LOC113540665
XR_003404077.1 other downstream 603667 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 604041 29524509 ~ 29524687 (-) True LOC113540697
TU87613 other upstream 602797 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 634591 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 1728210 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 1731646 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 1732287 31871159 ~ 31871639 (-) False LOC117597010

Expression Profile