RNA id: XR_004578042.1


Basic Information

Item Value
RNA id XR_004578042.1
length 688
lncRNA type intronic
GC content 0.34
exon number 4
gene id LOC117597151
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8888157 ~ 8893055 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctaGATGATTCTGCAGCTGAAGCCAGCAATATGCTCTACTCAGAGGTTGTCACTaggaagaagaaacaaaaggATGCTGCCACTGGACCAAGTGATGTGACTTATGCTGACATTGAActgaaaaaccaaaagaaaccaaagagaaaacaagGAAAGAGCAGTGAGGCAGCTGACACTGTTTACTCAGAACTGAAGCAGAACACAGATAAAGGTCCATGAAGAAAGTCTAAAGTCTCCAATCAAGAATTGCTGAAACGGCCAAAGAACatggtaaatatatattttagggAGGACACTGTAGTTTCTGGAAAGCTTGTTTTTTGCTTAATTCAAATCTAAGCATTGTACAGACTCCTGATAGGGATGTTAAAGGAACAGGAAGctgaatgcatttaaaattataCCTTCTATCTTTCACAATGGGCTGGAATTGGCTTCATCCAGGTTAAATTTAGTTGCCAGTTTTCATTCACTGCATCAGTATAACTAAGCTGGCAGTGTTGATTACTAAGTGTTCACTGGTATATTTTAATACTGATctcaattacaaaaaaaaaaacaagtatattATTGTTTCACATTTAACATTCCGCATTTAATTTgttgtacattattttattcaagtATTTTGTgttgtacattattttattcatgtattttgtgtttatttactcatttatgcTATTTA

Function

GO: NA

KEGG:

id description
ko05152 Tuberculosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72800 lncRNA downstream 7421 8879197 ~ 8880736 (-) True G61464
TU72796 lncRNA downstream 26411 8856303 ~ 8861746 (-) False LOC113526752
TU72795 lncRNA downstream 26411 8860266 ~ 8861746 (-) False LOC113526752
TU72775 lncRNA downstream 149677 8728354 ~ 8738480 (-) True G61445
TU72768 lncRNA downstream 209157 8672610 ~ 8679000 (-) False LOC113526752
TU72814 lncRNA upstream 42650 8935705 ~ 8936146 (-) False LOC113526752
TU72815 lncRNA upstream 43219 8936274 ~ 9152458 (-) False LOC113526752
XR_004578149.1 lncRNA upstream 100840 8993895 ~ 8994106 (-) True LOC117597240
TU72824 lncRNA upstream 128255 9021310 ~ 9235924 (-) True G61482
TU72833 lncRNA upstream 195652 9088707 ~ 9096874 (-) True G61489
XM_034303895.1 mRNA downstream 292532 8572259 ~ 8595625 (-) False LOC113526753
XM_034303894.1 mRNA downstream 309307 8572259 ~ 8578850 (-) False LOC113526753
XM_034303898.1 mRNA downstream 309307 8576612 ~ 8578850 (-) False LOC113526753
XM_034303896.1 mRNA downstream 312663 8571496 ~ 8575494 (-) True LOC113526753
XM_026914282.2 mRNA downstream 320169 8564114 ~ 8567988 (-) True LOC113526862
XM_034303885.1 mRNA upstream 24319 8917374 ~ 8924937 (-) False LOC113524717
XM_034303886.1 mRNA upstream 24319 8917374 ~ 8924937 (-) True LOC113524717
XM_026936304.2 mRNA upstream 421794 9314849 ~ 9327431 (-) True LOC113540087
XM_026936305.2 mRNA upstream 421794 9314849 ~ 9327324 (-) False LOC113540087
XM_026936307.2 mRNA upstream 421794 9314849 ~ 9322601 (-) False LOC113540087
XR_004578041.1 other downstream 309307 8575506 ~ 8578850 (-) False LOC113526753
TU71817 other downstream 1988930 6882469 ~ 6899227 (-) False LOC117597002
trnae-cuc_12 other downstream 2444342 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 2707198 6180887 ~ 6180959 (-) True trnak-cuu_3
TU71184 other downstream 2928612 5900249 ~ 5959545 (-) False G60166
TU72820 other upstream 90179 8983234 ~ 8984453 (-) True G61478
XR_003403995.2 other upstream 421794 9314849 ~ 9327431 (-) False LOC113540087
TU72884 other upstream 444771 9337826 ~ 9338745 (-) True G61537
TU73323 other upstream 633519 9526574 ~ 9528803 (-) False LOC113526752
TU73432 other upstream 883223 9776278 ~ 9805318 (-) True G61972

Expression Profile