Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578047.1 |
| length | 706 |
| lncRNA type | intronic |
| GC content | 0.50 |
| exon number | 2 |
| gene id | LOC117597154 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 9167556 ~ 9169479 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0031514 | motile cilium | cellular_component |
| id | description |
|---|---|
| ko04113 | Meiosis - yeast |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU72700 | lncRNA | upstream | 117032 | 8999522 ~ 9050524 (+) | True | G61377 |
| TU72653 | lncRNA | upstream | 129834 | 8724545 ~ 9037722 (+) | False | LOC113539869 |
| XR_004578044.1 | lncRNA | upstream | 251715 | 8910787 ~ 8915841 (+) | True | LOC113524706 |
| TU72680 | lncRNA | upstream | 252572 | 8910660 ~ 8914984 (+) | False | LOC113524706 |
| TU72681 | lncRNA | upstream | 252572 | 8910660 ~ 8914984 (+) | False | LOC113524706 |
| TU72737 | lncRNA | downstream | 72458 | 9241937 ~ 9243155 (+) | False | LOC113539869 |
| TU72864 | lncRNA | downstream | 145380 | 9314859 ~ 9317134 (+) | True | G61519 |
| TU72865 | lncRNA | downstream | 150682 | 9320161 ~ 9322444 (+) | True | G61520 |
| XR_003404092.2 | lncRNA | downstream | 163864 | 9333343 ~ 9333549 (+) | True | LOC113540718 |
| TU72881 | lncRNA | downstream | 165260 | 9334739 ~ 9335250 (+) | True | G61534 |
| XM_034303887.1 | mRNA | upstream | 176104 | 8987729 ~ 8991452 (+) | True | LOC117597148 |
| XM_034303888.1 | mRNA | upstream | 176104 | 8987729 ~ 8991452 (+) | False | LOC117597148 |
| XM_034303891.1 | mRNA | upstream | 176104 | 8987729 ~ 8991452 (+) | False | LOC117597148 |
| XM_034303890.1 | mRNA | upstream | 176104 | 8987729 ~ 8991452 (+) | False | LOC117597148 |
| XM_034303899.1 | mRNA | upstream | 330985 | 8834823 ~ 8836571 (+) | True | LOC117597150 |
| XM_026936309.2 | mRNA | downstream | 159856 | 9329335 ~ 9332782 (+) | True | LOC113540089 |
| XM_026937204.2 | mRNA | downstream | 259246 | 9428725 ~ 9434604 (+) | True | pnp5a |
| XM_026937201.2 | mRNA | downstream | 458269 | 9627748 ~ 9641910 (+) | False | sf3b2 |
| XM_026937200.2 | mRNA | downstream | 458270 | 9627749 ~ 9641910 (+) | True | sf3b2 |
| XM_034303599.1 | mRNA | downstream | 479825 | 9649304 ~ 9707936 (+) | True | LOC113539871 |
| TU72678 | other | upstream | 270827 | 8894470 ~ 8896729 (+) | True | G61359 |
| XR_004578049.1 | other | upstream | 443116 | 8695352 ~ 8724440 (+) | True | LOC117597156 |
| XR_003402765.2 | other | upstream | 1104717 | 8056056 ~ 8062839 (+) | False | LOC113526345 |
| XR_004578001.1 | other | upstream | 2570995 | 6595126 ~ 6596561 (+) | False | LOC117597080 |
| trnar-ucu_1 | other | upstream | 2736979 | 6430486 ~ 6430577 (+) | True | trnar-ucu_1 |
| XR_004578067.1 | other | downstream | 588981 | 9758460 ~ 9774049 (+) | False | rbm14b |
| XR_003403991.2 | other | downstream | 637842 | 9807321 ~ 9832280 (+) | False | gal3st3 |
| XR_004578013.1 | other | downstream | 691415 | 9860894 ~ 9881226 (+) | False | si:ch211-168d1.3 |
| XR_004578014.1 | other | downstream | 691415 | 9860894 ~ 9881226 (+) | False | si:ch211-168d1.3 |
| trnas-gcu | other | downstream | 742918 | 9912397 ~ 9912478 (+) | True | trnas-gcu |
