RNA id: XR_004578048.1


Basic Information

Item Value
RNA id XR_004578048.1
length 233
lncRNA type intronic
GC content 0.45
exon number 3
gene id LOC117597155
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8804314 ~ 8806081 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttgaatgctgaactgaagtctatgaatggcattcgaacatatgtgtctttattgtccaggtgtgtgagggccagatggagggtggtggtgatggtgtcatCTGTTGAACGGTTGAgacgATGCTGCCACTGGACCGAGTGATGTGACTTATGCTGACATTGAActgaaaaaccaaaagaaaccaaagagaaaacaagGAAAGAGCAGTGAGGCAGCTGACACTGTTTACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72650 lncRNA upstream 3990 8797472 ~ 8800324 (+) True G61347
TU72427 lncRNA upstream 477570 8291928 ~ 8326744 (+) True G61175
TU72429 lncRNA upstream 508213 8295371 ~ 8296101 (+) True G61176
TU72411 lncRNA upstream 565832 8218094 ~ 8238482 (+) True G61162
TU72311 lncRNA upstream 685463 8117708 ~ 8118851 (+) True G61098
TU72656 lncRNA downstream 6849 8812930 ~ 8813927 (+) False LOC113539869
XR_004578046.1 lncRNA downstream 27132 8833213 ~ 8834025 (+) True LOC117597153
TU72680 lncRNA downstream 104579 8910660 ~ 8914984 (+) False LOC113524706
TU72681 lncRNA downstream 104579 8910660 ~ 8914984 (+) False LOC113524706
TU72682 lncRNA downstream 104579 8910660 ~ 8914984 (+) False LOC113524706
XM_034304095.1 mRNA upstream 263023 8530188 ~ 8541291 (+) True si:cabz01074946.1
XM_034304096.1 mRNA upstream 263023 8530188 ~ 8541291 (+) False si:cabz01074946.1
XM_026914284.2 mRNA upstream 280026 8509133 ~ 8524288 (+) True vangl2
XM_034303539.1 mRNA upstream 299661 8465305 ~ 8504653 (+) True arhgef11
XM_026913781.2 mRNA upstream 447784 8231180 ~ 8356530 (+) True LOC113526595
XM_034303899.1 mRNA downstream 28742 8834823 ~ 8836571 (+) True LOC117597150
XM_034303887.1 mRNA downstream 181648 8987729 ~ 8991452 (+) True LOC117597148
XM_034303888.1 mRNA downstream 181648 8987729 ~ 8991452 (+) False LOC117597148
XM_034303891.1 mRNA downstream 181648 8987729 ~ 8991452 (+) False LOC117597148
XM_034303890.1 mRNA downstream 181648 8987729 ~ 8991452 (+) False LOC117597148
XR_004578049.1 other upstream 79874 8695352 ~ 8724440 (+) True LOC117597156
XR_003402765.2 other upstream 741475 8056056 ~ 8062839 (+) False LOC113526345
XR_004578001.1 other upstream 2207753 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 2373737 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 2660677 6143565 ~ 6143637 (+) False trnat-ugu_2
TU72678 other downstream 88389 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 952379 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 1001240 9807321 ~ 9832280 (+) False gal3st3
XR_004578013.1 other downstream 1054813 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_004578014.1 other downstream 1054813 9860894 ~ 9881226 (+) False si:ch211-168d1.3

Expression Profile