RNA id: XR_004578049.1


Basic Information

Item Value
RNA id XR_004578049.1
length 189
RNA type ncRNA
GC content 0.47
exon number 3
gene id LOC117597156
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8695352 ~ 8724440 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCatgtgatgctctTGCTGACGGGACTCATCCACTGCATACCAACAGagagtCCTAAACCTGTGGTGATTATAGAGCCTGATACACAGGtgttcagaggagagagagtgacttTCAGGTGtgacatacagagaggaggagacactGAGTGGACATACAGCTGGAATAAGAATGATTACACACTCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72427 lncRNA upstream 368608 8291928 ~ 8326744 (+) True G61175
TU72429 lncRNA upstream 399251 8295371 ~ 8296101 (+) True G61176
TU72411 lncRNA upstream 456870 8218094 ~ 8238482 (+) True G61162
TU72311 lncRNA upstream 576501 8117708 ~ 8118851 (+) True G61098
TU72309 lncRNA upstream 584909 8109478 ~ 8110443 (+) True G61096
TU72653 lncRNA downstream 105 8724545 ~ 9037722 (+) False LOC113539869
TU72660 lncRNA downstream 19323 8743763 ~ 8824178 (+) True G61350
TU72650 lncRNA downstream 73032 8797472 ~ 8800324 (+) True G61347
XR_004578048.1 lncRNA downstream 79874 8804314 ~ 8806081 (+) True LOC117597155
TU72656 lncRNA downstream 88490 8812930 ~ 8813927 (+) False LOC113539869
XM_034304095.1 mRNA upstream 154061 8530188 ~ 8541291 (+) True si:cabz01074946.1
XM_034304096.1 mRNA upstream 154061 8530188 ~ 8541291 (+) False si:cabz01074946.1
XM_026914284.2 mRNA upstream 171064 8509133 ~ 8524288 (+) True vangl2
XM_034303539.1 mRNA upstream 190699 8465305 ~ 8504653 (+) True arhgef11
XM_026913781.2 mRNA upstream 338822 8231180 ~ 8356530 (+) True LOC113526595
XM_034303874.1 mRNA downstream 60505 8784945 ~ 9370485 (+) True LOC113539869
XM_034303899.1 mRNA downstream 110383 8834823 ~ 8836571 (+) True LOC117597150
XM_034303887.1 mRNA downstream 263289 8987729 ~ 8991452 (+) True LOC117597148
XM_034303888.1 mRNA downstream 263289 8987729 ~ 8991452 (+) False LOC117597148
XM_034303891.1 mRNA downstream 263289 8987729 ~ 8991452 (+) False LOC117597148
XR_003402765.2 other upstream 632513 8056056 ~ 8062839 (+) False LOC113526345
XR_004578001.1 other upstream 2098791 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 2264775 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 2551715 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 2555980 6139300 ~ 6139372 (+) True trnat-ugu_1
TU72678 other downstream 170030 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 1034020 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 1082881 9807321 ~ 9832280 (+) False gal3st3
XR_004578013.1 other downstream 1136454 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_004578014.1 other downstream 1136454 9860894 ~ 9881226 (+) False si:ch211-168d1.3

Expression Profile