RNA id: XR_004578069.1


Basic Information

Item Value
RNA id XR_004578069.1
length 1939
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC117597165
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31544698 ~ 31546795 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACCTCGTCATGAAAATAAACCTTATTATAATAAACCTTAAACAAGTTTGCTTCAGTGTGCACTTATTTTCCATTGTGATTGCGTGTTACTTTATCCTTTAAACTCTGAGACTATCAGCTGTGTACCCAGCTAAATGTCTGCTGCTGACTCAAGAAGCACGagggttttgttttattccgAATGTAGTAACTAAAACTTGGGAAACTTACCTCTTCAAAAAAGAAGACACTGCAGATTTCCCCTCGGCAGCCGAGCATCTGCTCGGCGATAATTTCGCTGACTTTATGACGACTGGCTCTCAGATCCGTCTGAGTCTGCACGAACTGCAGATTTATGAACATGATGGTGGCAGGCCATATCTCTGGCAGGTCTTGCCATTGCCTGGTCTCATGTATCTAATGGAAGAATGGATTAATGGACAGTTCTAGGCCAAGGACCAACTCTGACTAAGAAAATGTACTGTACGATTGTCTAAAATACTGATTCTGATATATTATTGCTTTTAATAGTACTGACCTTTTCCAGGGCTGTTTGCATCATAAATTTACGTATGAGGTTTTCTCTCTCCATGTTAGTTAAGAGGTAAGCTCTTCTTGGGTatcctaaagaaataaaatgtttaaattgatttatgtaacattaataGAAATGTATGTATTAAAAGCTGTGtgaaaataagtaaaaacaGATCTGCCTTACCTCTCATAAGGATGTCGAAGTTGTAAAGGCTCAGGTCTTCCACTGAGACGCTTTGCTGTTGCCTGATGTATCGCACCTGATGAAtcatcattaatatcattaaagTTCAACtcggagggaaaaaaaacggcTCCGTCAGTCTGTGAGACTTTAAGCCGCCATGCTTCAGGGGAGAGAATGATGTTGCCATGCTTCGCCAGCACCTCAGCCGATCTCATCTCGTCCACAGCCGGCCCGATGACAACACAAAGCTGACTCTCTTCATCTCCTAGTCTCACTCTGGAGAACTTCCCAGCAGATATGGCTACCACAGACAAGAACAGCAcaacatGTCCCTTCGAGCCATGTTCTGTCCTTTGGATTTCACACACATCCAGGATTTTGAAAGCACATTGGACAGCCTGAGATATGGTGTCACTCAGCTGCGCGTTCTCCTCCACCCACTCGGCCAGAATCGCATCACCTGCAGGCACGATCATGTAACATCCATGTACCGTCATACGTGCAAATATGTCTTCTAACAAATAGGTTtccagaataaaataaagataccTGCGTCGTGCACAACGTGAGCACCTGCAGCACGGACACCTGCAGTGGAGTTCAAACAGACGTCACTATCTGCTCCGTTCAGAATGAACTGAAAAATTAGTCCAGGCCACAAAGACCTTAACTTACATGCAGCTCTTTCTTTCGAGCAGCGGTTGCAAAGGTAGCTCATGAATCCTGTAGCAGAAGAAAAAATTACAAGAATACTCCAGcacaatatatttaatacaaaaacacagagtCCAAACTAATTTGTCTAAAAGGGTGGCATCTTCCTGTTTACTAATTAATGATATAAATCTACCTTGCACTCCTCTTACTGAAAGTCGCACCTGTTATTGGCCATTTTTTAGAAAGTAAATATCAAAttagtgtttatattaaaattggaGTATTGTAAGTTGTTATATTACACACAGTGGGATTGATCATGTAGTGCagttatgtactgtatgtaagtagtaactgtgtgtgtaaataaataaataaatagtttatgAAAACTGTTGCTCTTGGGAAAATAGTTAACTATAAGTGTACAGCATAAGTGTGCAGAAGTGATTGAGTTTTTTCACTAGTTATCACTAGGTATCGCTGTAGCTACATGATATTTGAgcagaaaatatttacacattaaaacaaacatttattctGCCAAGTAACCAATCAGACAGCTCCTCTTCGGCTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88025 lncRNA upstream 11475 31531453 ~ 31533223 (+) True G74309
XR_004578070.1 lncRNA upstream 13502 31524103 ~ 31531196 (+) True LOC117597166
TU88032 lncRNA upstream 16628 31527856 ~ 31528070 (+) True G74315
TU87899 lncRNA upstream 188577 31355554 ~ 31356121 (+) True G74199
TU87857 lncRNA upstream 293941 31247090 ~ 31250757 (+) True G74158
TU88103 lncRNA downstream 160433 31707228 ~ 31707436 (+) True G74370
TU88120 lncRNA downstream 187861 31734656 ~ 31743095 (+) True G74384
TU88089 lncRNA downstream 223026 31769821 ~ 31775982 (+) False LOC113540067
XR_004578059.1 lncRNA downstream 231326 31778121 ~ 31846428 (+) False LOC113540254
XR_004578058.1 lncRNA downstream 231330 31778125 ~ 31846428 (+) False LOC113540254
XM_026936980.2 mRNA upstream 191568 31351201 ~ 31353130 (+) True c4h22orf39
XM_034303408.1 mRNA upstream 300619 31239568 ~ 31244079 (+) True si:ch211-119o8.6
XM_026936712.2 mRNA upstream 307797 31222287 ~ 31236901 (+) True copb2
XM_026936713.2 mRNA upstream 307797 31222287 ~ 31236901 (+) False copb2
XM_034303992.1 mRNA upstream 323678 31218928 ~ 31221020 (+) True LOC113540056
XM_026935828.2 mRNA downstream 1485 31548280 ~ 31560707 (+) True prmt5
XM_034303928.1 mRNA downstream 19486 31566281 ~ 31581540 (+) True ap1g2
XM_026937095.2 mRNA downstream 37305 31584100 ~ 31586755 (+) True zp3f.2
XM_034304000.1 mRNA downstream 40466 31587261 ~ 31594687 (+) False LOC113540625
XM_026937209.2 mRNA downstream 40466 31587261 ~ 31594677 (+) True LOC113540625
TU87898 other upstream 191554 31351261 ~ 31353144 (+) False c4h22orf39
TU87706 other upstream 446810 31061730 ~ 31097888 (+) False spsb4a
TU87615 other upstream 777566 30746131 ~ 30767132 (+) True G73944
TU87616 other upstream 777566 30746131 ~ 30767132 (+) False G73944
TU86682 other upstream 1921661 29619993 ~ 29623037 (+) False asip2b
XR_004578111.1 other downstream 223027 31769822 ~ 31776798 (+) True LOC113540067
LOC117597174 other downstream 399253 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 412227 31959022 ~ 31959667 (+) True LOC117597173
TU88365 other downstream 412247 31959042 ~ 32330845 (+) False LOC117597173
LOC117597122 other downstream 414074 31960869 ~ 31965136 (+) True LOC117597122

Expression Profile