Item | Value |
---|---|
RNA id | XR_004578070.1 |
length | 1101 |
lncRNA type | inter_gene |
GC content | 0.44 |
exon number | 2 |
gene id | LOC117597166 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_047598.1 |
NCBI id | CM018544.1 |
chromosome length | 33267568 |
location | 31524103 ~ 31531196 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU87899 | lncRNA | upstream | 167982 | 31355554 ~ 31356121 (+) | True | G74199 |
TU87857 | lncRNA | upstream | 273346 | 31247090 ~ 31250757 (+) | True | G74158 |
TU87688 | lncRNA | upstream | 492733 | 31030388 ~ 31031370 (+) | True | G74006 |
TU87694 | lncRNA | upstream | 505629 | 31018111 ~ 31018474 (+) | True | G74011 |
TU87625 | lncRNA | upstream | 751217 | 30772602 ~ 30772886 (+) | True | G73952 |
TU88025 | lncRNA | downstream | 257 | 31531453 ~ 31533223 (+) | True | G74309 |
XR_004578069.1 | lncRNA | downstream | 13502 | 31544698 ~ 31546795 (+) | True | LOC117597165 |
TU88103 | lncRNA | downstream | 176032 | 31707228 ~ 31707436 (+) | True | G74370 |
TU88120 | lncRNA | downstream | 203460 | 31734656 ~ 31743095 (+) | True | G74384 |
TU88089 | lncRNA | downstream | 238625 | 31769821 ~ 31775982 (+) | False | LOC113540067 |
XM_026936980.2 | mRNA | upstream | 170973 | 31351201 ~ 31353130 (+) | True | c4h22orf39 |
XM_034303408.1 | mRNA | upstream | 280024 | 31239568 ~ 31244079 (+) | True | si:ch211-119o8.6 |
XM_026936712.2 | mRNA | upstream | 287202 | 31222287 ~ 31236901 (+) | True | copb2 |
XM_026936713.2 | mRNA | upstream | 287202 | 31222287 ~ 31236901 (+) | False | copb2 |
XM_034303992.1 | mRNA | upstream | 303083 | 31218928 ~ 31221020 (+) | True | LOC113540056 |
XM_026935828.2 | mRNA | downstream | 17084 | 31548280 ~ 31560707 (+) | True | prmt5 |
XM_034303928.1 | mRNA | downstream | 35085 | 31566281 ~ 31581540 (+) | True | ap1g2 |
XM_026937095.2 | mRNA | downstream | 52904 | 31584100 ~ 31586755 (+) | True | zp3f.2 |
XM_034304000.1 | mRNA | downstream | 56065 | 31587261 ~ 31594687 (+) | False | LOC113540625 |
XM_026937209.2 | mRNA | downstream | 56065 | 31587261 ~ 31594677 (+) | True | LOC113540625 |
TU87898 | other | upstream | 170959 | 31351261 ~ 31353144 (+) | False | c4h22orf39 |
TU87706 | other | upstream | 426215 | 31061730 ~ 31097888 (+) | False | spsb4a |
TU87615 | other | upstream | 756971 | 30746131 ~ 30767132 (+) | True | G73944 |
TU87616 | other | upstream | 756971 | 30746131 ~ 30767132 (+) | False | G73944 |
TU86682 | other | upstream | 1901066 | 29619993 ~ 29623037 (+) | False | asip2b |
XR_004578111.1 | other | downstream | 238626 | 31769822 ~ 31776798 (+) | True | LOC113540067 |
LOC117597174 | other | downstream | 414852 | 31946048 ~ 31946542 (+) | True | LOC117597174 |
LOC117597173 | other | downstream | 427826 | 31959022 ~ 31959667 (+) | True | LOC117597173 |
TU88365 | other | downstream | 427846 | 31959042 ~ 32330845 (+) | False | LOC117597173 |
LOC117597122 | other | downstream | 429673 | 31960869 ~ 31965136 (+) | True | LOC117597122 |