Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578076.1 |
| length | 796 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 4 |
| gene id | LOC113547239 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 4590344 ~ 4591768 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU70264 | lncRNA | downstream | 26849 | 4562924 ~ 4563495 (-) | False | LOC117597059 |
| TU70259 | lncRNA | downstream | 29834 | 4559733 ~ 4560510 (-) | True | G59385 |
| TU70169 | lncRNA | downstream | 35435 | 4554700 ~ 4554909 (-) | True | G59303 |
| TU70151 | lncRNA | downstream | 102374 | 4486517 ~ 4487970 (-) | True | G59287 |
| XR_004578028.1 | lncRNA | downstream | 179523 | 4409520 ~ 4410821 (-) | False | LOC117597095 |
| XR_004578075.1 | lncRNA | upstream | 1639 | 4593407 ~ 4596529 (-) | True | LOC117597175 |
| TU70281 | lncRNA | upstream | 85397 | 4677165 ~ 4678736 (-) | True | G59398 |
| TU70283 | lncRNA | upstream | 85397 | 4677165 ~ 4678736 (-) | False | G59398 |
| TU70282 | lncRNA | upstream | 85791 | 4677559 ~ 4678736 (-) | False | G59398 |
| TU70306 | lncRNA | upstream | 165663 | 4757431 ~ 4757765 (-) | True | G59416 |
| XM_034303593.1 | mRNA | downstream | 18517 | 4560788 ~ 4571827 (-) | True | LOC117597059 |
| XM_026947467.2 | mRNA | downstream | 63237 | 4514603 ~ 4527107 (-) | True | maf1b |
| XM_034303587.1 | mRNA | downstream | 305952 | 4269168 ~ 4284392 (-) | True | LOC117597053 |
| XM_034303795.1 | mRNA | downstream | 334066 | 4230485 ~ 4256278 (-) | True | LOC113537670 |
| XM_034303797.1 | mRNA | downstream | 380238 | 4171199 ~ 4210106 (-) | True | LOC113547240 |
| XM_034304010.1 | mRNA | upstream | 13404 | 4605172 ~ 4609562 (-) | False | LOC113547216 |
| XM_034304009.1 | mRNA | upstream | 13404 | 4605172 ~ 4609562 (-) | True | LOC113547216 |
| XM_026947466.2 | mRNA | upstream | 21260 | 4613028 ~ 4633265 (-) | True | LOC113547217 |
| XM_026947531.2 | mRNA | upstream | 42557 | 4634325 ~ 4640284 (-) | True | LOC113547273 |
| XM_026947529.2 | mRNA | upstream | 50252 | 4642020 ~ 4647759 (-) | True | LOC113547272 |
| TU70115 | other | downstream | 334060 | 4238397 ~ 4256284 (-) | False | LOC113537670 |
| TU70112 | other | downstream | 355105 | 4232650 ~ 4235239 (-) | False | LOC113537670 |
| TU70066 | other | downstream | 670213 | 3895201 ~ 3920131 (-) | False | LOC117597092 |
| XR_004578034.1 | other | downstream | 865779 | 3710571 ~ 3724565 (-) | True | LOC117597100 |
| TU69907 | other | downstream | 957111 | 3630059 ~ 3633233 (-) | False | si:ch73-174h16.4 |
| TU70276 | other | upstream | 54688 | 4646456 ~ 4647880 (-) | False | LOC113547272 |
| trnar-ucg_1 | other | upstream | 218024 | 4809792 ~ 4809864 (-) | True | trnar-ucg_1 |
| TU70820 | other | upstream | 886774 | 5478542 ~ 5485797 (-) | False | cldn1 |
| TU71182 | other | upstream | 1308481 | 5900249 ~ 5930199 (-) | True | G60166 |
| TU71184 | other | upstream | 1308481 | 5900249 ~ 5959545 (-) | False | G60166 |
