RNA id: XR_004578081.1


Basic Information

Item Value
RNA id XR_004578081.1
length 538
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC117597178
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31908648 ~ 31909914 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTGCTCCACGGAGTTTCCTTAAAATCAGacagtttcctccaggttctctggtttcctcccacctcccattaacatgcagGATCCTGCAGCTGATCCAGTTGAGCTGGAATGAGGCAAGTCTTCTGGGGTTGTGGAAAGCCAGAGCACTTGACTACGCCTAAGTAAAAGTGGGAGGAGCTAGATGTGCAGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGACATATCTTCAAGTGAAGGCAGCAGCaccacactgacctgcacataTGATCAATCAGCTGACTATCTCTACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGCTGAGGATTTATATATCTACAGAGCGTGTCAGTAAAGCTGAACAACTTGACCCAAGACTATCCATCAGACTCcgtaaaaatgaaaagaaagtagATCTGGAGATCTTTCCTGCTGCAGTATCAGACTCTTCACTGTACTACTGCGCCATGGAGCCCACAGTGACAcaaaactcaaacacactgtacaaaaagtGAAGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88356 lncRNA downstream 7091 31893851 ~ 31901557 (-) True G74553
TU88244 lncRNA downstream 122891 31736292 ~ 31785757 (-) True G74458
TU88242 lncRNA downstream 152344 31753121 ~ 31756304 (-) True G74457
TU88243 lncRNA downstream 152344 31753121 ~ 31756304 (-) False G74457
TU88271 lncRNA downstream 163186 31744351 ~ 31745462 (-) True G74479
XR_004577914.1 lncRNA upstream 201672 32111586 ~ 32112411 (-) True LOC113540655
TU88436 lncRNA upstream 254140 32164054 ~ 32164414 (-) True G74619
TU88439 lncRNA upstream 290451 32200365 ~ 32200804 (-) True G74622
XR_004577913.1 lncRNA upstream 292167 32202081 ~ 32202854 (-) True LOC117596963
TU88457 lncRNA upstream 717647 32627561 ~ 32627996 (-) True G74640
XM_026935889.2 mRNA downstream 181096 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 364014 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 375390 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 439007 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 913644 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 1062871 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 1221173 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 1221173 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 1221173 33131087 ~ 33134319 (-) True c4h14orf119
LOC117597011 other downstream 25041 31882943 ~ 31883607 (-) True LOC117597011
TU88353 other downstream 28092 31880034 ~ 31880556 (-) True G74550
TU88350 other downstream 33821 31874309 ~ 31874827 (-) True G74547
LOC117597010 other downstream 36774 31870518 ~ 31871874 (-) True LOC117597010
LOC117597180 other upstream 21391 31931305 ~ 31932063 (-) True LOC117597180
TU88423 other upstream 156898 32066812 ~ 32067337 (-) True G74607
TU88425 other upstream 164469 32074383 ~ 32113455 (-) True LOC117596957
LOC117596957 other upstream 164474 32074388 ~ 32074888 (-) False LOC117596957
LOC117595679 other upstream 215658 32125572 ~ 32126462 (-) True LOC117595679

Expression Profile