Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578084.1 |
| length | 1299 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 5 |
| gene id | LOC117597182 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 14977326 ~ 15011493 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU76586 | lncRNA | upstream | 214730 | 14762335 ~ 14762596 (+) | True | G64673 |
| TU76581 | lncRNA | upstream | 296513 | 14680206 ~ 14680813 (+) | True | G64668 |
| TU76370 | lncRNA | upstream | 680854 | 14296270 ~ 14296472 (+) | True | G64462 |
| TU76367 | lncRNA | upstream | 682065 | 14295002 ~ 14295261 (+) | True | G64459 |
| TU76204 | lncRNA | upstream | 920439 | 14056527 ~ 14056887 (+) | True | G64308 |
| TU76906 | lncRNA | downstream | 189816 | 15201309 ~ 15201528 (+) | True | G64963 |
| XR_004578089.1 | lncRNA | downstream | 494799 | 15506292 ~ 15556924 (+) | True | LOC117597190 |
| TU77079 | lncRNA | downstream | 857705 | 15869198 ~ 15870771 (+) | True | G65115 |
| TU77137 | lncRNA | downstream | 989662 | 16001155 ~ 16001461 (+) | True | G65170 |
| TU77152 | lncRNA | downstream | 1008364 | 16019857 ~ 16055145 (+) | True | G65184 |
| XM_026936678.2 | mRNA | upstream | 8725 | 14889300 ~ 14968601 (+) | True | zmp:0000000660 |
| XM_026937085.2 | mRNA | upstream | 147415 | 14824102 ~ 14829911 (+) | True | paqr9 |
| XM_034303978.1 | mRNA | upstream | 215761 | 14686254 ~ 14761565 (+) | True | adam19a |
| XM_034304075.1 | mRNA | upstream | 330086 | 14638490 ~ 14647240 (+) | True | zgc:194930 |
| XM_034304076.1 | mRNA | upstream | 330087 | 14632731 ~ 14647239 (+) | False | zgc:194930 |
| XM_026936099.2 | mRNA | downstream | 892862 | 15904355 ~ 15916921 (+) | False | cckar |
| XM_034304111.1 | mRNA | downstream | 898015 | 15909508 ~ 15916921 (+) | True | cckar |
| XM_026936548.2 | mRNA | downstream | 980682 | 15992175 ~ 16000945 (+) | True | plaa |
| XM_026936290.2 | mRNA | downstream | 1011701 | 16023194 ~ 16036384 (+) | False | LOC113540079 |
| XM_026936288.2 | mRNA | downstream | 1011702 | 16023195 ~ 16039984 (+) | True | LOC113540079 |
| XR_004578093.1 | other | upstream | 318390 | 14632030 ~ 14658936 (+) | False | zgc:194930 |
| XR_004578085.1 | other | upstream | 707986 | 14255744 ~ 14269340 (+) | False | brms1 |
| XR_004577999.1 | other | upstream | 1257872 | 13705576 ~ 13719454 (+) | False | gc2 |
| XR_003404009.2 | other | upstream | 1415060 | 13558623 ~ 13562266 (+) | True | cited1 |
| TU75730 | other | upstream | 1502289 | 13470769 ~ 13475037 (+) | False | LOC113539889 |
| XR_003403994.2 | other | downstream | 1011702 | 16023195 ~ 16039984 (+) | False | LOC113540079 |
| XR_004578074.1 | other | downstream | 1298720 | 16310213 ~ 16319166 (+) | False | LOC113539780 |
| XR_003404046.2 | other | downstream | 1356463 | 16367956 ~ 16370684 (+) | False | LOC113540582 |
| XR_003404110.1 | other | downstream | 1749026 | 16760519 ~ 16760583 (+) | True | LOC113540740 |
| XR_003404111.1 | other | downstream | 1749256 | 16760749 ~ 16760819 (+) | True | LOC113540741 |
