RNA id: XR_004578089.1


Basic Information

Item Value
RNA id XR_004578089.1
length 415
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC117597190
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 15506292 ~ 15556924 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGGTCTATTTGCAGTTCCATACCTGTGCTGAATTCCACACCTTCCAGATTTCCCTGTGCCTTGTTACTCCCCATGACGTCATCACTGCCGGGCTAGTCAAGTCATTGGGTGATGAGCCCATCGATTAGTCCTTGGTTCCAATATTCAGACAGCGAGGAAGTCAACACCATCTTGTGGGACTGAAGCAGTTGCCAGACAACTGTGGCTTCTAACGTAGATGATATGTACACACTCAGATGAGGATCCCAGgtgtgaatgagtatgtgaaatGCCCTGGGATGCACTGGTGTCTCATCCAGAATGTATTTCCAACTCAAACCCAGTGTTCCAGAGGATATCTTCAGGaattactgaagataaatacATTAATCAGTATTCTTTAAACCTGACAGCATCAAATGTGAAGCTTTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76906 lncRNA upstream 304764 15201309 ~ 15201528 (+) True G64963
XR_004578083.1 lncRNA upstream 494799 14977326 ~ 15011493 (+) True LOC117597182
XR_004578084.1 lncRNA upstream 494799 14977326 ~ 15011493 (+) False LOC117597182
TU76586 lncRNA upstream 743696 14762335 ~ 14762596 (+) True G64673
TU76581 lncRNA upstream 825479 14680206 ~ 14680813 (+) True G64668
TU77079 lncRNA downstream 312274 15869198 ~ 15870771 (+) True G65115
TU77137 lncRNA downstream 444231 16001155 ~ 16001461 (+) True G65170
TU77152 lncRNA downstream 462933 16019857 ~ 16055145 (+) True G65184
TU77172 lncRNA downstream 505164 16062088 ~ 16063461 (+) True G65199
TU77337 lncRNA downstream 666494 16223418 ~ 16231115 (+) True G65335
XM_026936678.2 mRNA upstream 537691 14889300 ~ 14968601 (+) True zmp:0000000660
XM_026937085.2 mRNA upstream 676381 14824102 ~ 14829911 (+) True paqr9
XM_034303978.1 mRNA upstream 744727 14686254 ~ 14761565 (+) True adam19a
XM_034304075.1 mRNA upstream 859052 14638490 ~ 14647240 (+) True zgc:194930
XM_034304076.1 mRNA upstream 859053 14632731 ~ 14647239 (+) False zgc:194930
XM_026936099.2 mRNA downstream 347431 15904355 ~ 15916921 (+) False cckar
XM_034304111.1 mRNA downstream 352584 15909508 ~ 15916921 (+) True cckar
XM_026936548.2 mRNA downstream 435251 15992175 ~ 16000945 (+) True plaa
XM_026936290.2 mRNA downstream 466270 16023194 ~ 16036384 (+) False LOC113540079
XM_026936288.2 mRNA downstream 466271 16023195 ~ 16039984 (+) True LOC113540079
XR_004578093.1 other upstream 847356 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 1236952 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 1786838 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 1944026 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 2031255 13470769 ~ 13475037 (+) False LOC113539889
XR_003403994.2 other downstream 466271 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 753289 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 811032 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 1203595 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 1203825 16760749 ~ 16760819 (+) True LOC113540741

Expression Profile