Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578119.1 |
| length | 212 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 1 |
| gene id | LOC117597211 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 9592389 ~ 9592600 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004578134.1 | lncRNA | downstream | 901 | 9591281 ~ 9591488 (-) | True | LOC117597226 |
| XR_004578147.1 | lncRNA | downstream | 2110 | 9590067 ~ 9590279 (-) | True | LOC117597238 |
| XR_004578125.1 | lncRNA | downstream | 3983 | 9588201 ~ 9588406 (-) | True | LOC117597219 |
| XR_004578153.1 | lncRNA | downstream | 4565 | 9587613 ~ 9587824 (-) | True | LOC117597244 |
| XR_004578152.1 | lncRNA | downstream | 7393 | 9584789 ~ 9584996 (-) | True | LOC117597243 |
| XR_003404100.2 | lncRNA | upstream | 672 | 9593272 ~ 9593483 (-) | True | LOC113540727 |
| XR_003404079.2 | lncRNA | upstream | 1254 | 9593854 ~ 9594059 (-) | True | LOC113540705 |
| TU73331 | lncRNA | upstream | 3066 | 9595666 ~ 9596101 (-) | True | LOC113540717 |
| XR_003404091.2 | lncRNA | upstream | 3296 | 9595896 ~ 9596110 (-) | False | LOC113540717 |
| XR_003404101.2 | lncRNA | upstream | 5042 | 9597642 ~ 9597848 (-) | True | LOC113540728 |
| XM_034303884.1 | mRNA | downstream | 20925 | 9533997 ~ 9571464 (-) | False | capn1 |
| XM_026935986.2 | mRNA | downstream | 107788 | 9474178 ~ 9484601 (-) | True | LOC113539885 |
| XM_026936422.2 | mRNA | upstream | 290111 | 9882711 ~ 9889757 (-) | True | zgc:101810 |
| XM_034303449.1 | mRNA | upstream | 299751 | 9892351 ~ 9896258 (-) | False | six7 |
| XM_026937032.2 | mRNA | upstream | 299751 | 9892351 ~ 9896256 (-) | True | six7 |
| XM_026935933.2 | mRNA | upstream | 314959 | 9907559 ~ 9911772 (-) | True | b4gat1 |
| XM_026937084.2 | mRNA | upstream | 321634 | 9914234 ~ 9919791 (-) | True | pfdn2 |
| TU73323 | other | downstream | 63586 | 9526574 ~ 9528803 (-) | False | LOC113526752 |
| TU72884 | other | downstream | 253644 | 9337826 ~ 9338745 (-) | True | G61537 |
| XR_003403995.2 | other | downstream | 264958 | 9314849 ~ 9327431 (-) | False | LOC113540087 |
| TU72820 | other | downstream | 607936 | 8983234 ~ 8984453 (-) | True | G61478 |
| XR_004578041.1 | other | downstream | 1013539 | 8575506 ~ 8578850 (-) | False | LOC113526753 |
| TU73432 | other | upstream | 183678 | 9776278 ~ 9805318 (-) | True | G61972 |
| TU73337 | other | upstream | 435387 | 10027987 ~ 10037575 (-) | False | G61900 |
| trnan-guu | other | upstream | 881796 | 10474396 ~ 10474470 (-) | True | trnan-guu |
| trnan-guu_1 | other | upstream | 883023 | 10475623 ~ 10475696 (-) | True | trnan-guu_1 |
| trnan-guu_2 | other | upstream | 884258 | 10476858 ~ 10476930 (-) | True | trnan-guu_2 |
