Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578135.1 |
| length | 213 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 1 |
| gene id | LOC117597227 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 10040482 ~ 10040694 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003404083.2 | lncRNA | downstream | 895 | 10039380 ~ 10039587 (-) | True | LOC113540709 |
| XR_003404094.1 | lncRNA | downstream | 1716 | 10038554 ~ 10038766 (-) | True | LOC113540720 |
| XR_004577932.1 | lncRNA | downstream | 2499 | 10026874 ~ 10037983 (-) | True | LOC117596979 |
| XR_004577931.1 | lncRNA | downstream | 2500 | 10030877 ~ 10037982 (-) | False | LOC117596979 |
| XR_004578128.1 | lncRNA | downstream | 3125 | 10037145 ~ 10037357 (-) | True | LOC117597222 |
| XR_003404074.2 | lncRNA | upstream | 873 | 10041567 ~ 10041779 (-) | True | LOC113540700 |
| TU73473 | lncRNA | upstream | 29712 | 10070406 ~ 10073193 (-) | True | cxcl19 |
| TU73517 | lncRNA | upstream | 38233 | 10078927 ~ 10080217 (-) | False | LOC113540372 |
| XR_004577927.1 | lncRNA | upstream | 161537 | 10202231 ~ 10211232 (-) | True | LOC113540369 |
| TU73581 | lncRNA | upstream | 323318 | 10364012 ~ 10364892 (-) | True | G62108 |
| XM_034303217.1 | mRNA | downstream | 16705 | 9997315 ~ 10023777 (-) | False | intu |
| XM_034303216.1 | mRNA | downstream | 16707 | 9997315 ~ 10023775 (-) | False | intu |
| XM_034303215.1 | mRNA | downstream | 19018 | 9997315 ~ 10021464 (-) | False | intu |
| XM_034303214.1 | mRNA | downstream | 19018 | 9997315 ~ 10021464 (-) | True | intu |
| XM_034303262.1 | mRNA | downstream | 47615 | 9980997 ~ 9992867 (-) | False | aadat |
| XM_034303271.1 | mRNA | upstream | 5878 | 10046572 ~ 10053214 (-) | False | trmt10b |
| XM_034303270.1 | mRNA | upstream | 5878 | 10046572 ~ 10053214 (-) | False | trmt10b |
| XM_026936792.2 | mRNA | upstream | 5878 | 10046572 ~ 10053214 (-) | True | trmt10b |
| XM_026936815.2 | mRNA | upstream | 30122 | 10070816 ~ 10073229 (-) | False | cxcl19 |
| XM_034303281.1 | mRNA | upstream | 37994 | 10078688 ~ 10080237 (-) | True | LOC113540372 |
| TU73337 | other | downstream | 2907 | 10027987 ~ 10037575 (-) | False | G61900 |
| TU73432 | other | downstream | 235164 | 9776278 ~ 9805318 (-) | True | G61972 |
| TU73323 | other | downstream | 511679 | 9526574 ~ 9528803 (-) | False | LOC113526752 |
| TU72884 | other | downstream | 701737 | 9337826 ~ 9338745 (-) | True | G61537 |
| XR_003403995.2 | other | downstream | 713051 | 9314849 ~ 9327431 (-) | False | LOC113540087 |
| trnan-guu | other | upstream | 433702 | 10474396 ~ 10474470 (-) | True | trnan-guu |
| trnan-guu_1 | other | upstream | 434929 | 10475623 ~ 10475696 (-) | True | trnan-guu_1 |
| trnan-guu_2 | other | upstream | 436164 | 10476858 ~ 10476930 (-) | True | trnan-guu_2 |
| trnan-guu_3 | other | upstream | 438605 | 10479299 ~ 10479372 (-) | True | trnan-guu_3 |
| trnan-guu_4 | other | upstream | 439823 | 10480517 ~ 10480591 (-) | True | trnan-guu_4 |
