Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578137.1 |
| length | 213 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 1 |
| gene id | LOC117597229 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 9606743 ~ 9606955 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004578151.1 | lncRNA | downstream | 1939 | 9604592 ~ 9604804 (-) | True | LOC117597242 |
| XR_004578139.1 | lncRNA | downstream | 3416 | 9603120 ~ 9603327 (-) | True | LOC117597231 |
| XR_004578140.1 | lncRNA | downstream | 7536 | 9599001 ~ 9599207 (-) | True | LOC117597232 |
| XR_003404101.2 | lncRNA | downstream | 8895 | 9597642 ~ 9597848 (-) | True | LOC113540728 |
| XR_003404091.2 | lncRNA | downstream | 10633 | 9595896 ~ 9596110 (-) | False | LOC113540717 |
| XR_003404084.2 | lncRNA | upstream | 4846 | 9611801 ~ 9612008 (-) | True | LOC113540710 |
| XR_004578148.1 | lncRNA | upstream | 6313 | 9613268 ~ 9613480 (-) | True | LOC117597239 |
| XR_004578136.1 | lncRNA | upstream | 6899 | 9613854 ~ 9614060 (-) | True | LOC117597228 |
| XR_004578138.1 | lncRNA | upstream | 9040 | 9615995 ~ 9616207 (-) | True | LOC117597230 |
| XR_003404089.2 | lncRNA | upstream | 13260 | 9620215 ~ 9620426 (-) | True | LOC113540715 |
| XM_034303884.1 | mRNA | downstream | 35279 | 9533997 ~ 9571464 (-) | False | capn1 |
| XM_026935986.2 | mRNA | downstream | 122142 | 9474178 ~ 9484601 (-) | True | LOC113539885 |
| XM_026936422.2 | mRNA | upstream | 275756 | 9882711 ~ 9889757 (-) | True | zgc:101810 |
| XM_034303449.1 | mRNA | upstream | 285396 | 9892351 ~ 9896258 (-) | False | six7 |
| XM_026937032.2 | mRNA | upstream | 285396 | 9892351 ~ 9896256 (-) | True | six7 |
| XM_026935933.2 | mRNA | upstream | 300604 | 9907559 ~ 9911772 (-) | True | b4gat1 |
| XM_026937084.2 | mRNA | upstream | 307279 | 9914234 ~ 9919791 (-) | True | pfdn2 |
| TU73323 | other | downstream | 77940 | 9526574 ~ 9528803 (-) | False | LOC113526752 |
| TU72884 | other | downstream | 267998 | 9337826 ~ 9338745 (-) | True | G61537 |
| XR_003403995.2 | other | downstream | 279312 | 9314849 ~ 9327431 (-) | False | LOC113540087 |
| TU72820 | other | downstream | 622290 | 8983234 ~ 8984453 (-) | True | G61478 |
| XR_004578041.1 | other | downstream | 1027893 | 8575506 ~ 8578850 (-) | False | LOC113526753 |
| TU73432 | other | upstream | 169323 | 9776278 ~ 9805318 (-) | True | G61972 |
| TU73337 | other | upstream | 421032 | 10027987 ~ 10037575 (-) | False | G61900 |
| trnan-guu | other | upstream | 867441 | 10474396 ~ 10474470 (-) | True | trnan-guu |
| trnan-guu_1 | other | upstream | 868668 | 10475623 ~ 10475696 (-) | True | trnan-guu_1 |
| trnan-guu_2 | other | upstream | 869903 | 10476858 ~ 10476930 (-) | True | trnan-guu_2 |
