Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578144.1 |
| length | 205 |
| lncRNA type | intronic |
| GC content | 0.38 |
| exon number | 1 |
| gene id | LOC117597236 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 9532840 ~ 9533044 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU73319 | lncRNA | downstream | 15957 | 9510571 ~ 9516883 (-) | True | LOC117597223 |
| XR_003404085.2 | lncRNA | downstream | 16182 | 9516451 ~ 9516658 (-) | True | LOC113540711 |
| XR_003404097.2 | lncRNA | downstream | 16649 | 9515981 ~ 9516191 (-) | True | LOC113540724 |
| XR_003404090.2 | lncRNA | downstream | 17760 | 9514869 ~ 9515080 (-) | True | LOC113540716 |
| XR_003404078.2 | lncRNA | downstream | 19959 | 9512675 ~ 9512881 (-) | True | LOC113540704 |
| XR_004578145.1 | lncRNA | upstream | 41903 | 9574947 ~ 9575160 (-) | True | LOC117597237 |
| XR_003404088.2 | lncRNA | upstream | 45254 | 9578298 ~ 9578510 (-) | True | LOC113540714 |
| XR_003404095.2 | lncRNA | upstream | 46980 | 9580024 ~ 9580241 (-) | True | LOC113540721 |
| XR_003404082.2 | lncRNA | upstream | 47766 | 9580810 ~ 9581016 (-) | True | LOC113540708 |
| XR_004578123.1 | lncRNA | upstream | 48329 | 9581373 ~ 9581577 (-) | True | LOC117597217 |
| XM_034303873.1 | mRNA | downstream | 4015 | 8639468 ~ 9528825 (-) | True | LOC113526752 |
| XM_034303879.1 | mRNA | downstream | 48239 | 9474177 ~ 9484601 (-) | False | LOC113539885 |
| XM_026935986.2 | mRNA | downstream | 48239 | 9474178 ~ 9484601 (-) | True | LOC113539885 |
| XM_034303880.1 | mRNA | downstream | 48239 | 9474816 ~ 9484601 (-) | False | LOC113539885 |
| XM_034303878.1 | mRNA | downstream | 48239 | 9474862 ~ 9484601 (-) | False | LOC113539885 |
| XM_034303884.1 | mRNA | upstream | 953 | 9533997 ~ 9571464 (-) | False | capn1 |
| XM_026936422.2 | mRNA | upstream | 349667 | 9882711 ~ 9889757 (-) | True | zgc:101810 |
| XM_034303449.1 | mRNA | upstream | 359307 | 9892351 ~ 9896258 (-) | False | six7 |
| XM_026937032.2 | mRNA | upstream | 359307 | 9892351 ~ 9896256 (-) | True | six7 |
| XM_026935933.2 | mRNA | upstream | 374515 | 9907559 ~ 9911772 (-) | True | b4gat1 |
| TU73323 | other | downstream | 4037 | 9526574 ~ 9528803 (-) | False | LOC113526752 |
| TU72884 | other | downstream | 194095 | 9337826 ~ 9338745 (-) | True | G61537 |
| XR_003403995.2 | other | downstream | 205409 | 9314849 ~ 9327431 (-) | False | LOC113540087 |
| TU72820 | other | downstream | 548387 | 8983234 ~ 8984453 (-) | True | G61478 |
| XR_004578041.1 | other | downstream | 953990 | 8575506 ~ 8578850 (-) | False | LOC113526753 |
| TU73432 | other | upstream | 243234 | 9776278 ~ 9805318 (-) | True | G61972 |
| TU73337 | other | upstream | 494943 | 10027987 ~ 10037575 (-) | False | G61900 |
| trnan-guu | other | upstream | 941352 | 10474396 ~ 10474470 (-) | True | trnan-guu |
| trnan-guu_1 | other | upstream | 942579 | 10475623 ~ 10475696 (-) | True | trnan-guu_1 |
| trnan-guu_2 | other | upstream | 943814 | 10476858 ~ 10476930 (-) | True | trnan-guu_2 |
