Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578145.1 |
| length | 214 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 1 |
| gene id | LOC117597237 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 9574947 ~ 9575160 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004578144.1 | lncRNA | downstream | 41903 | 9532840 ~ 9533044 (-) | True | LOC117597236 |
| TU73319 | lncRNA | downstream | 58064 | 9510571 ~ 9516883 (-) | True | LOC117597223 |
| XR_003404085.2 | lncRNA | downstream | 58289 | 9516451 ~ 9516658 (-) | True | LOC113540711 |
| XR_003404097.2 | lncRNA | downstream | 58756 | 9515981 ~ 9516191 (-) | True | LOC113540724 |
| XR_003404090.2 | lncRNA | downstream | 59867 | 9514869 ~ 9515080 (-) | True | LOC113540716 |
| XR_003404088.2 | lncRNA | upstream | 3138 | 9578298 ~ 9578510 (-) | True | LOC113540714 |
| XR_003404095.2 | lncRNA | upstream | 4864 | 9580024 ~ 9580241 (-) | True | LOC113540721 |
| XR_003404082.2 | lncRNA | upstream | 5650 | 9580810 ~ 9581016 (-) | True | LOC113540708 |
| XR_004578123.1 | lncRNA | upstream | 6213 | 9581373 ~ 9581577 (-) | True | LOC117597217 |
| XR_004578127.1 | lncRNA | upstream | 7724 | 9582884 ~ 9583090 (-) | True | LOC117597221 |
| XM_034303884.1 | mRNA | downstream | 3483 | 9533997 ~ 9571464 (-) | False | capn1 |
| XM_034303882.1 | mRNA | downstream | 3484 | 9439350 ~ 9571463 (-) | True | capn1 |
| XM_034303883.1 | mRNA | downstream | 9596 | 9439350 ~ 9565351 (-) | False | capn1 |
| XM_034303873.1 | mRNA | downstream | 46122 | 8639468 ~ 9528825 (-) | True | LOC113526752 |
| XM_034303879.1 | mRNA | downstream | 90346 | 9474177 ~ 9484601 (-) | False | LOC113539885 |
| XM_026936422.2 | mRNA | upstream | 307551 | 9882711 ~ 9889757 (-) | True | zgc:101810 |
| XM_034303449.1 | mRNA | upstream | 317191 | 9892351 ~ 9896258 (-) | False | six7 |
| XM_026937032.2 | mRNA | upstream | 317191 | 9892351 ~ 9896256 (-) | True | six7 |
| XM_026935933.2 | mRNA | upstream | 332399 | 9907559 ~ 9911772 (-) | True | b4gat1 |
| XM_026937084.2 | mRNA | upstream | 339074 | 9914234 ~ 9919791 (-) | True | pfdn2 |
| TU73323 | other | downstream | 46144 | 9526574 ~ 9528803 (-) | False | LOC113526752 |
| TU72884 | other | downstream | 236202 | 9337826 ~ 9338745 (-) | True | G61537 |
| XR_003403995.2 | other | downstream | 247516 | 9314849 ~ 9327431 (-) | False | LOC113540087 |
| TU72820 | other | downstream | 590494 | 8983234 ~ 8984453 (-) | True | G61478 |
| XR_004578041.1 | other | downstream | 996097 | 8575506 ~ 8578850 (-) | False | LOC113526753 |
| TU73432 | other | upstream | 201118 | 9776278 ~ 9805318 (-) | True | G61972 |
| TU73337 | other | upstream | 452827 | 10027987 ~ 10037575 (-) | False | G61900 |
| trnan-guu | other | upstream | 899236 | 10474396 ~ 10474470 (-) | True | trnan-guu |
| trnan-guu_1 | other | upstream | 900463 | 10475623 ~ 10475696 (-) | True | trnan-guu_1 |
| trnan-guu_2 | other | upstream | 901698 | 10476858 ~ 10476930 (-) | True | trnan-guu_2 |
