RNA id: XR_004578147.1



Basic Information


Item Value
RNA id XR_004578147.1
length 213
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id LOC117597238
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9590067 ~ 9590279 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


aAGACTATACTTTCAgggatcatttctatagtgtcTAACTAGGATATGTGATTTGAAAGTGTTATGTCTCTCTGATCACGATGACGAGGTCTGATGTGTTTTTCCAAGTACAATTCAGATTGCAGCAGGTGATTCTTTCATGAGCTTTAATCATTGATGAATGTTCTTCACTTTTTAGAAAGTGTGAGAGGAAGAGTACATGATCAGAGTGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_004578125.1 lncRNA downstream 1661 9588201 ~ 9588406 (-) True LOC117597219
XR_004578153.1 lncRNA downstream 2243 9587613 ~ 9587824 (-) True LOC117597244
XR_004578152.1 lncRNA downstream 5071 9584789 ~ 9584996 (-) True LOC117597243
XR_004578121.1 lncRNA downstream 5920 9583943 ~ 9584147 (-) True LOC117597213
XR_004578127.1 lncRNA downstream 6977 9582884 ~ 9583090 (-) True LOC117597221
XR_004578134.1 lncRNA upstream 1002 9591281 ~ 9591488 (-) True LOC117597226
XR_004578119.1 lncRNA upstream 2110 9592389 ~ 9592600 (-) True LOC117597211
XR_003404100.2 lncRNA upstream 2993 9593272 ~ 9593483 (-) True LOC113540727
XR_003404079.2 lncRNA upstream 3575 9593854 ~ 9594059 (-) True LOC113540705
TU73331 lncRNA upstream 5387 9595666 ~ 9596101 (-) True LOC113540717
XM_034303884.1 mRNA downstream 18603 9533997 ~ 9571464 (-) False capn1
XM_026935986.2 mRNA downstream 105466 9474178 ~ 9484601 (-) True LOC113539885
XM_026936422.2 mRNA upstream 292432 9882711 ~ 9889757 (-) True zgc:101810
XM_034303449.1 mRNA upstream 302072 9892351 ~ 9896258 (-) False six7
XM_026937032.2 mRNA upstream 302072 9892351 ~ 9896256 (-) True six7
XM_026935933.2 mRNA upstream 317280 9907559 ~ 9911772 (-) True b4gat1
XM_026937084.2 mRNA upstream 323955 9914234 ~ 9919791 (-) True pfdn2
TU73323 other downstream 61264 9526574 ~ 9528803 (-) False LOC113526752
TU72884 other downstream 251322 9337826 ~ 9338745 (-) True G61537
XR_003403995.2 other downstream 262636 9314849 ~ 9327431 (-) False LOC113540087
TU72820 other downstream 605614 8983234 ~ 8984453 (-) True G61478
XR_004578041.1 other downstream 1011217 8575506 ~ 8578850 (-) False LOC113526753
TU73432 other upstream 185999 9776278 ~ 9805318 (-) True G61972
TU73337 other upstream 437708 10027987 ~ 10037575 (-) False G61900
trnan-guu other upstream 884117 10474396 ~ 10474470 (-) True trnan-guu
trnan-guu_1 other upstream 885344 10475623 ~ 10475696 (-) True trnan-guu_1
trnan-guu_2 other upstream 886579 10476858 ~ 10476930 (-) True trnan-guu_2

Expression Profile