RNA id: trnag-ucc_1


Basic Information

Item Value
RNA id trnag-ucc_1
length 72
RNA type tRNA
GC content 0.58
exon number 1
gene id trnag-ucc_1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2658003 ~ 2658074 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATTGGTGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTtgacccgggttcgattcccggccaatGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69432 lncRNA downstream 39210 2607752 ~ 2618793 (-) True G58648
TU69434 lncRNA downstream 40574 2611416 ~ 2617429 (-) True G58650
TU69428 lncRNA downstream 47751 2604477 ~ 2610252 (-) True G58645
TU69409 lncRNA downstream 90199 2535115 ~ 2567804 (-) True G58628
TU69378 lncRNA downstream 255699 2376593 ~ 2402304 (-) True G58598
TU69449 lncRNA upstream 14697 2672771 ~ 2676029 (-) True trnag-ucc_4
TU69453 lncRNA upstream 22507 2680581 ~ 2726283 (-) True trnag-ucc_9
TU69498 lncRNA upstream 173098 2831172 ~ 2831373 (-) True G58703
TU69499 lncRNA upstream 174604 2832678 ~ 2834631 (-) True G58704
XR_003402482.2 lncRNA upstream 186506 2844580 ~ 2853974 (-) True LOC113524008
XM_026910111.2 mRNA downstream 309659 2284687 ~ 2348344 (-) False greb1l
XM_026910112.2 mRNA downstream 336934 2284687 ~ 2321069 (-) False greb1l
XM_026910110.2 mRNA downstream 336934 2284687 ~ 2321069 (-) True greb1l
XM_026910091.2 mRNA downstream 445402 2204789 ~ 2212601 (-) True LOC113523983
XM_026910084.2 mRNA downstream 465110 2175540 ~ 2192893 (-) True kiaa0232
XM_034303541.1 mRNA upstream 72712 2730786 ~ 2732506 (-) True LOC117597042
XM_034303550.1 mRNA upstream 107444 2765518 ~ 2767521 (-) True LOC117597045
XM_026910119.2 mRNA upstream 146421 2804495 ~ 2811641 (-) False ccdc96
XM_034304004.1 mRNA upstream 146421 2804495 ~ 2811402 (-) True ccdc96
XM_026910120.2 mRNA upstream 146421 2804495 ~ 2811275 (-) False ccdc96
TU69336 other downstream 435904 2204552 ~ 2222099 (-) False LOC113523983
TU69291 other downstream 574074 2071024 ~ 2083929 (-) False G58534
trnav-cac_1 other downstream 657953 1999978 ~ 2000050 (-) True trnav-cac_1
TU68836 other downstream 965006 1692326 ~ 1692997 (-) True G58190
TU68413 other downstream 1609162 1041777 ~ 1048841 (-) False G57868
trnag-ucc_2 other upstream 8693 2666767 ~ 2666838 (-) True trnag-ucc_2
trnag-ucc_3 other upstream 13826 2671900 ~ 2671971 (-) True trnag-ucc_3
trnag-ucc_4 other upstream 17896 2675970 ~ 2676041 (-) False trnag-ucc_4
trnag-ucc_5 other upstream 22701 2680775 ~ 2680846 (-) True trnag-ucc_5
trnag-ucc_6 other upstream 47977 2706051 ~ 2706122 (-) True trnag-ucc_6