RNA id: trnah-gug_5


Basic Information

Item Value
RNA id trnah-gug_5
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnah-gug_5
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19828819 ~ 19828890 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGTGATCGTATAGTGGTTAGTACTCTGCGTTGTGGCCGCAGCAACCCCGGTTCGAATCCGGGTCACGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577989.1 lncRNA upstream 4560 19821178 ~ 19824259 (+) True LOC117597044
TU79753 lncRNA upstream 5971 19811964 ~ 19822848 (+) True G67287
TU79755 lncRNA upstream 62397 19764260 ~ 19766422 (+) True G67289
TU79758 lncRNA upstream 68189 19743640 ~ 19760630 (+) True G67291
TU79757 lncRNA upstream 78445 19743640 ~ 19750374 (+) False G67291
TU80083 lncRNA downstream 51088 19879978 ~ 19881739 (+) True G67579
TU80087 lncRNA downstream 59288 19888178 ~ 19888725 (+) True G67582
TU80110 lncRNA downstream 82849 19911739 ~ 19914403 (+) True G67594
TU80111 lncRNA downstream 87710 19916600 ~ 19917169 (+) True G67595
TU80167 lncRNA downstream 133709 19962599 ~ 19965888 (+) True G67642
XM_034303403.1 mRNA upstream 134303 19651897 ~ 19694516 (+) True LOC113539894
XM_026936525.2 mRNA upstream 343673 19481055 ~ 19485146 (+) True LOC113540207
XM_026936526.2 mRNA upstream 343673 19481055 ~ 19485146 (+) False LOC113540207
XM_026936523.2 mRNA upstream 344709 19481055 ~ 19484110 (+) False LOC113540207
XM_034303433.1 mRNA upstream 357857 19455026 ~ 19470962 (+) True LOC113540575
XM_026935817.2 mRNA downstream 38261 19867151 ~ 19872149 (+) True LOC113539773
XM_026936965.2 mRNA downstream 53038 19881928 ~ 19886701 (+) True slx1b
XM_026937193.2 mRNA downstream 114850 19943740 ~ 19953223 (+) True si:ch73-71d17.2
XM_026937262.2 mRNA downstream 142421 19971311 ~ 19983277 (+) True ntn4
XM_026937321.2 mRNA downstream 161794 19990684 ~ 20067220 (+) True dock11
trnah-gug_4 other upstream 437 19828311 ~ 19828382 (+) True trnah-gug_4
TU79253 other upstream 970167 18856456 ~ 18858652 (+) True G66864
TU78855 other upstream 1620255 18197312 ~ 18208564 (+) True G66492
XR_004577948.1 other upstream 1698314 18113444 ~ 18130505 (+) False frem1a
XR_003403977.2 other upstream 1817857 18000158 ~ 18010962 (+) False ctdnep1b
trnar-ucu_2 other downstream 272135 20101025 ~ 20101098 (+) True trnar-ucu_2
TU80337 other downstream 318905 20147795 ~ 20154771 (+) False fcer1g
trnaa-cgc other downstream 523524 20352414 ~ 20352485 (+) True trnaa-cgc
TU80896 other downstream 1191368 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 1498456 21327346 ~ 21327420 (+) True LOC113540699