RNA id: trnak-cuu_20


Basic Information

Item Value
RNA id trnak-cuu_20
length 73
RNA type tRNA
GC content 0.62
exon number 1
gene id trnak-cuu_20
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10531456 ~ 10531528 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577940.1 lncRNA upstream 24979 10499275 ~ 10506477 (+) True LOC117596986
TU73615 lncRNA upstream 34096 10497130 ~ 10497360 (+) True G62131
TU73272 lncRNA upstream 45414 10474768 ~ 10486042 (+) True trnak-cuu_13
TU73244 lncRNA upstream 172492 10357814 ~ 10358964 (+) True G61842
XR_004577941.1 lncRNA upstream 240772 10289874 ~ 10290684 (+) True LOC117596987
TU73717 lncRNA downstream 126324 10657852 ~ 10663407 (+) False c4h4orf48
XR_004577939.1 lncRNA downstream 284222 10815750 ~ 10816552 (+) True LOC117596985
TU73906 lncRNA downstream 333127 10864655 ~ 10864861 (+) True G62373
TU73963 lncRNA downstream 375497 10907025 ~ 10910142 (+) True G62416
XR_004577928.1 lncRNA downstream 488605 11020133 ~ 11022796 (+) True LOC113540371
XM_034303831.1 mRNA upstream 47309 10482489 ~ 10484147 (+) True LOC117597108
XM_026936782.2 mRNA upstream 134720 10392375 ~ 10396736 (+) True si:ch211-1o7.2
XM_026936741.2 mRNA upstream 160802 10362990 ~ 10370654 (+) True LOC113540310
XM_034303830.1 mRNA upstream 250644 10270843 ~ 10280812 (+) True LOC117597107
XM_034303250.1 mRNA upstream 264698 10248537 ~ 10266758 (+) True LOC113538341
XM_026936783.2 mRNA downstream 30704 10562232 ~ 10569484 (+) True rgp1
XM_034303266.1 mRNA downstream 30704 10562232 ~ 10569484 (+) False rgp1
XM_034303267.1 mRNA downstream 31120 10562648 ~ 10569484 (+) False rgp1
XM_026936745.2 mRNA downstream 43395 10574923 ~ 10595122 (+) True pik3c3
XM_034303242.1 mRNA downstream 104177 10635705 ~ 10644751 (+) True faah2b
trnan-guu_13 other upstream 412 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 35986 10495398 ~ 10495470 (+) True trnak-cuu_19
trnak-cuu_18 other upstream 39587 10491797 ~ 10491869 (+) True trnak-cuu_18
trnak-cuu_17 other upstream 40806 10490578 ~ 10490650 (+) True trnak-cuu_17
trnak-cuu_16 other upstream 42020 10489365 ~ 10489436 (+) True trnak-cuu_16
trnak-cuu_21 other downstream 34125 10565653 ~ 10565724 (+) True trnak-cuu_21
TU73719 other downstream 125829 10657357 ~ 10663407 (+) True c4h4orf48
XR_003403980.2 other downstream 1113374 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 1760986 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 2886849 13418377 ~ 13418696 (+) True G63903