RNA id: trnak-cuu_21


Basic Information

Item Value
RNA id trnak-cuu_21
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnak-cuu_21
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10565653 ~ 10565724 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tccctagaggactagtggttaggccacagcactcttACTGCTgcagcccgggttcgattcccggccagggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577940.1 lncRNA upstream 59176 10499275 ~ 10506477 (+) True LOC117596986
TU73615 lncRNA upstream 68293 10497130 ~ 10497360 (+) True G62131
TU73272 lncRNA upstream 79611 10474768 ~ 10486042 (+) True trnak-cuu_13
TU73244 lncRNA upstream 206689 10357814 ~ 10358964 (+) True G61842
XR_004577941.1 lncRNA upstream 274969 10289874 ~ 10290684 (+) True LOC117596987
TU73717 lncRNA downstream 92128 10657852 ~ 10663407 (+) False c4h4orf48
XR_004577939.1 lncRNA downstream 250026 10815750 ~ 10816552 (+) True LOC117596985
TU73906 lncRNA downstream 298931 10864655 ~ 10864861 (+) True G62373
TU73963 lncRNA downstream 341301 10907025 ~ 10910142 (+) True G62416
XR_004577928.1 lncRNA downstream 454409 11020133 ~ 11022796 (+) True LOC113540371
XM_034303831.1 mRNA upstream 81506 10482489 ~ 10484147 (+) True LOC117597108
XM_026936782.2 mRNA upstream 168917 10392375 ~ 10396736 (+) True si:ch211-1o7.2
XM_026936741.2 mRNA upstream 194999 10362990 ~ 10370654 (+) True LOC113540310
XM_034303830.1 mRNA upstream 284841 10270843 ~ 10280812 (+) True LOC117597107
XM_034303250.1 mRNA upstream 298895 10248537 ~ 10266758 (+) True LOC113538341
XM_026936745.2 mRNA downstream 9199 10574923 ~ 10595122 (+) True pik3c3
XM_034303242.1 mRNA downstream 69981 10635705 ~ 10644751 (+) True faah2b
XM_026936773.2 mRNA downstream 69981 10635705 ~ 10644751 (+) False faah2b
XM_026936818.2 mRNA downstream 92326 10658050 ~ 10663411 (+) False c4h4orf48
XM_026936819.2 mRNA downstream 92326 10658050 ~ 10663411 (+) False c4h4orf48
trnak-cuu_20 other upstream 34125 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 34609 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 70183 10495398 ~ 10495470 (+) True trnak-cuu_19
trnak-cuu_18 other upstream 73784 10491797 ~ 10491869 (+) True trnak-cuu_18
trnak-cuu_17 other upstream 75003 10490578 ~ 10490650 (+) True trnak-cuu_17
TU73719 other downstream 91633 10657357 ~ 10663407 (+) True c4h4orf48
XR_003403980.2 other downstream 1079178 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 1726790 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 2852653 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 2905045 13470769 ~ 13475037 (+) False LOC113539889