RNA id: trnar-ucu_1


Basic Information

Item Value
RNA id trnar-ucu_1
length 73
RNA type tRNA
GC content 0.56
exon number 2
gene id trnar-ucu_1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6430486 ~ 6430577 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTCTGTGGCGCAATGGATAGCGCATTGGACTTCTAATtcaaaggttgtgggttcgagtcccaCCAGAGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71422 lncRNA upstream 4142 6426119 ~ 6426344 (+) True G60384
TU71400 lncRNA upstream 16473 6413800 ~ 6414013 (+) True G60362
TU71349 lncRNA upstream 50024 6380245 ~ 6380462 (+) True G60312
XR_004577957.1 lncRNA upstream 124924 6301325 ~ 6305562 (+) False LOC117596997
XR_004577956.1 lncRNA upstream 125596 6301325 ~ 6304890 (+) True LOC117596997
TU71549 lncRNA downstream 164549 6595126 ~ 6596601 (+) True LOC117597080
XR_004578118.1 lncRNA downstream 192259 6622836 ~ 6623651 (+) True LOC113547253
XR_003404802.2 lncRNA downstream 218205 6648782 ~ 6651846 (+) True LOC113547233
TU71586 lncRNA downstream 253759 6684336 ~ 6685832 (+) False LOC113547228
TU71609 lncRNA downstream 358643 6789220 ~ 6797109 (+) True G60529
XM_026947472.2 mRNA upstream 225596 6202522 ~ 6204890 (+) True foxc1a
XM_026947454.2 mRNA upstream 253327 6171029 ~ 6177159 (+) True foxf2a
XM_026947455.2 mRNA upstream 266646 6162153 ~ 6163840 (+) True foxq1a
XM_026947555.2 mRNA upstream 393254 6014920 ~ 6037232 (+) True irf4a
XM_026947473.2 mRNA upstream 420702 5991928 ~ 6009784 (+) True dusp22b
XM_034303942.1 mRNA downstream 120408 6550985 ~ 6572077 (+) False wrnip1
XM_034303941.1 mRNA downstream 120409 6550986 ~ 6570557 (+) True wrnip1
XM_026947544.2 mRNA downstream 141491 6572068 ~ 6576902 (+) True LOC113547283
XM_034303652.1 mRNA downstream 149778 6580355 ~ 6602411 (+) True dhx30
XM_026947481.2 mRNA downstream 213951 6644528 ~ 6647156 (+) False LOC113547232
trnat-ugu_2 other upstream 286849 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 291114 6139300 ~ 6139372 (+) True trnat-ugu_1
TU70896 other upstream 834360 5580144 ~ 5596126 (+) False LOC113547291
XR_004578077.1 other upstream 1242440 5179562 ~ 5188046 (+) False LOC113547261
TU70397 other upstream 1422353 4974195 ~ 5008133 (+) True G59492
XR_004578001.1 other downstream 164549 6595126 ~ 6596561 (+) False LOC117597080
XR_003402765.2 other downstream 1625479 8056056 ~ 8062839 (+) False LOC113526345
XR_004578049.1 other downstream 2264775 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 2463893 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 3327883 9758460 ~ 9774049 (+) False rbm14b